Variant report

Variant	rs536790883
Chromosome Location	chr12:2164076-2164077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948480	chr12:1776217-2284333	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv898598	chr12:1939252-2215448	Strong transcription Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1040370	chr12:2021395-2671017	Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv948400	chr12:2022411-2601363	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv521838	chr12:2060580-2299680	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1035885	chr12:2077660-2310157	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv541350	chr12:2077660-2310157	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1038722	chr12:2085035-2308205	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv541351	chr12:2085035-2308205	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv898601	chr12:2124955-2215448	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv826182	chr12:2136395-2208074	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv826183	chr12:2147469-2257818	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv898602	chr12:2149786-2223740	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv18914	chr12:2160989-2164159	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv557001	chr12:2161561-2164108	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv3360073	chr12:2161716-2164564	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv557004	chr12:2162033-2164108	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv557006	chr12:2162216-2164108	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv557007	chr12:2162369-2165956	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv557008	chr12:2162576-2165147	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:2160800-2164200	Active TSS	NHDF-Ad	bronchial
2	chr12:2160800-2166200	Active TSS	Brain Angular Gyrus	brain
3	chr12:2161000-2164200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr12:2161000-2165800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr12:2161000-2167000	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr12:2161200-2164200	Active TSS	Brain Substantia Nigra	brain
7	chr12:2161200-2164400	Bivalent/Poised TSS	Colonic Mucosa	Colon
8	chr12:2161200-2165200	Active TSS	Aorta	Aorta
9	chr12:2161200-2165600	Active TSS	Brain Hippocampus Middle	brain
10	chr12:2161200-2165800	Active TSS	Right Ventricle	heart
11	chr12:2161400-2164200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr12:2161400-2164200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr12:2161400-2164200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr12:2161400-2164400	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr12:2161400-2164800	Active TSS	Left Ventricle	heart
16	chr12:2161400-2165400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:2161400-2165400	Active TSS	NHLF	lung
18	chr12:2161400-2165800	Active TSS	Colon Smooth Muscle	Colon
19	chr12:2161400-2166200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr12:2161600-2164200	Active TSS	Rectal Smooth Muscle	rectum
21	chr12:2161600-2165200	Bivalent/Poised TSS	Fetal Stomach	stomach
22	chr12:2161600-2165400	Active TSS	Brain Cingulate Gyrus	brain
23	chr12:2161600-2165600	Active TSS	Brain Anterior Caudate	brain
24	chr12:2162000-2164600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
25	chr12:2162200-2165600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
26	chr12:2162600-2164800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
27	chr12:2162800-2164200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
28	chr12:2162800-2164400	Active TSS	Pancreas	Pancrea
29	chr12:2162800-2165000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
30	chr12:2162800-2178600	Enhancers	Fetal Heart	heart
31	chr12:2163000-2165000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
32	chr12:2163400-2164200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:2163400-2164200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
34	chr12:2163400-2164400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr12:2163400-2165000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr12:2163400-2165200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
37	chr12:2163600-2164400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
38	chr12:2163600-2164800	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
39	chr12:2163600-2165400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr12:2163600-2168600	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr12:2163800-2164200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr12:2163800-2164200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:2163800-2164200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr12:2163800-2164200	Flanking Active TSS	Right Atrium	heart
45	chr12:2163800-2164400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr12:2163800-2164400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr12:2163800-2164400	Bivalent/Poised TSS	Fetal Kidney	kidney
48	chr12:2163800-2164600	Active TSS	Ovary	ovary
49	chr12:2163800-2164800	Active TSS	Lung	lung
50	chr12:2164000-2164200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links