Variant report

Variant	rs536809170
Chromosome Location	chr7:69914340-69914341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69911189..69912929-chr7:69913285..69916011,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1029586	chr7:69817143-69978454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv538927	chr7:69817143-69978454	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv888338	chr7:69860713-69952187	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv888339	chr7:69879914-69952187	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv888340	chr7:69879914-69959059	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1034697	chr7:69913860-70004248	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv538928	chr7:69913860-70004248	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69898200-69918400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:69899000-69930200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:69899800-69918000	Weak transcription	Fetal Stomach	stomach
4	chr7:69900600-69922800	Weak transcription	Ovary	ovary
5	chr7:69901000-69918000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:69904000-69922200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:69911800-69922200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:69912400-69924800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:69913200-69915400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:69913400-69914600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:69913400-69914600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:69913400-69914600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:69913400-69915400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:69913400-69920200	Weak transcription	Primary B cells from cord blood	blood
15	chr7:69913600-69914400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:69913600-69914600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:69913800-69915400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr7:69914000-69914600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr7:69914000-69921400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:69914200-69914400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:69914200-69914600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:69914200-69914600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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