Variant report

Variant	rs536851911
Chromosome Location	chr10:98591075-98591076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr10:98591055-98591332	K562	blood:	n/a	n/a
2	CTCF	chr10:98590980-98591130	HCFaa	heart:	n/a	n/a
3	CTCF	chr10:98589953-98591136	A549	lung:	n/a	chr10:98590851-98590864 chr10:98590477-98590490
4	CTCF	chr10:98591040-98591190	HPAF	blood vessel:	n/a	n/a
5	CTCF	chr10:98590960-98591110	AG10803	skin:	n/a	n/a
6	MAZ	chr10:98590958-98594417	IMR90	lung:	n/a	chr10:98593391-98593400 chr10:98591712-98591722 chr10:98594053-98594062 chr10:98593017-98593027
7	CTCF	chr10:98590960-98591110	AG09319	gingival:	n/a	n/a
8	CTCF	chr10:98591000-98591150	AoAF	blood vessel:	n/a	n/a
9	CTCF	chr10:98591000-98591150	HPF	lung:	n/a	n/a
10	POLR2A	chr10:98590930-98593013	PBDE	blood:	n/a	n/a
11	CTCF	chr10:98590980-98591130	AG09309	skin:	n/a	n/a
12	IRF1	chr10:98590983-98591755	K562	blood:	n/a	chr10:98591711-98591725
13	MXI1	chr10:98590975-98594494	IMR90	lung:	n/a	n/a
14	CTCF	chr10:98591040-98591190	AG09319	gingival:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:98524912..98526111-chr10:98589792..98591303,11	MCF-7	breast:
2	chr10:98590420..98592007-chr10:98615843..98619097,3	K562	blood:
3	chr10:98398475..98400373-chr10:98590281..98591916,2	MCF-7	breast:
4	chr10:98392223..98394189-chr10:98590324..98593027,3	MCF-7	breast:
5	chr10:98272672..98275170-chr10:98590720..98593680,2	MCF-7	breast:
6	chr10:98584665..98586917-chr10:98589906..98591474,2	K562	blood:
7	chr10:98133863..98136449-chr10:98590863..98592811,2	MCF-7	breast:
8	chr10:98523538..98526378-chr10:98589191..98591883,2	MCF-7	breast:
9	chr10:98345052..98347789-chr10:98590945..98593407,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIK3AP1-6	chr10:98590424-98592003	NONHSAT015837

No data

Variant related genes	Relation type
MIR607	TF binding region
LCOR	TF binding region
ENSG00000155629	Chromatin interaction
ENSG00000077147	Chromatin interaction
ENSG00000095587	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	esv3427855	chr10:98590262-98594060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3419281	chr10:98590962-98594060	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv3420262	chr10:98590987-98593835	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98587200-98591400	Weak transcription	Left Ventricle	heart
2	chr10:98589200-98591200	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:98590000-98591200	Enhancers	Primary T cells from cord blood	blood
4	chr10:98590000-98591200	Enhancers	Primary hematopoietic stem cells	blood
5	chr10:98590000-98591200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr10:98590000-98591200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:98590000-98591200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:98590000-98591200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr10:98590000-98591400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:98590000-98591400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:98590000-98591400	Enhancers	Small Intestine	intestine
12	chr10:98590000-98591600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:98590000-98591600	Enhancers	Stomach Mucosa	stomach
14	chr10:98590200-98591200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:98590200-98591200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:98590200-98591200	Enhancers	Colon Smooth Muscle	Colon
17	chr10:98590200-98591200	Enhancers	Fetal Intestine Small	intestine
18	chr10:98590200-98594600	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr10:98590400-98591200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:98590400-98591200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:98590400-98591200	Enhancers	Brain Substantia Nigra	brain
22	chr10:98590400-98591200	Enhancers	Fetal Intestine Large	intestine
23	chr10:98590400-98591200	Weak transcription	Fetal Kidney	kidney
24	chr10:98590400-98591200	Enhancers	HUVEC	blood vessel
25	chr10:98590400-98594400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr10:98590400-98594400	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr10:98590600-98591200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr10:98590600-98591200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:98590600-98591200	Enhancers	Liver	Liver
30	chr10:98590600-98591200	Enhancers	Brain Hippocampus Middle	brain
31	chr10:98590600-98591200	Enhancers	Colonic Mucosa	Colon
32	chr10:98590600-98591200	Enhancers	Placenta	Placenta
33	chr10:98590600-98591400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr10:98590600-98591600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr10:98590600-98594400	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr10:98590800-98591200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr10:98590800-98591200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
38	chr10:98590800-98591200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:98590800-98591200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:98590800-98591200	Enhancers	Fetal Heart	heart
41	chr10:98590800-98591200	Enhancers	Fetal Muscle Leg	muscle
42	chr10:98590800-98591200	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr10:98590800-98591200	Flanking Active TSS	K562	blood
44	chr10:98590800-98591400	Flanking Active TSS	GM12878-XiMat	blood
45	chr10:98590800-98591600	Flanking Active TSS	Dnd41	blood
46	chr10:98590800-98591600	Flanking Active TSS	Hela-S3	cervix
47	chr10:98590800-98591600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr10:98590800-98591600	Flanking Active TSS	NHDF-Ad	bronchial
49	chr10:98590800-98593600	Active TSS	Rectal Smooth Muscle	rectum
50	chr10:98590800-98594000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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