Variant report

Variant	rs536907240
Chromosome Location	chr11:120225535-120225536
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120206632..120208724-chr11:120224150..120227495,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196914	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv529003	chr11:120209386-120355230	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1050935	chr11:120224544-120276373	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120215400-120225600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:120216000-120239000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:120216400-120244800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:120217200-120228600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:120217200-120232000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:120217400-120225600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:120217400-120234000	Weak transcription	Aorta	Aorta
8	chr11:120217600-120257000	Weak transcription	HSMM	muscle
9	chr11:120218000-120228400	Enhancers	Liver	Liver
10	chr11:120218200-120225600	Weak transcription	Psoas Muscle	Psoas
11	chr11:120218200-120229600	Weak transcription	GM12878-XiMat	blood
12	chr11:120218600-120231800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:120218600-120232000	Weak transcription	Fetal Stomach	stomach
14	chr11:120218600-120232400	Weak transcription	HUVEC	blood vessel
15	chr11:120218800-120230600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:120220400-120232800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:120220600-120232000	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:120222800-120226000	Enhancers	HepG2	liver
19	chr11:120223200-120225600	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:120223200-120225800	Enhancers	Fetal Intestine Small	intestine
21	chr11:120223200-120225800	Enhancers	Fetal Lung	lung
22	chr11:120223200-120225800	Enhancers	Left Ventricle	heart
23	chr11:120223400-120226400	Enhancers	Fetal Intestine Large	intestine
24	chr11:120223400-120226400	Enhancers	Ovary	ovary
25	chr11:120223400-120226400	Enhancers	Right Ventricle	heart
26	chr11:120223600-120226400	Enhancers	Small Intestine	intestine
27	chr11:120223800-120225800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:120224400-120225800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:120224400-120225800	Enhancers	NHDF-Ad	bronchial
30	chr11:120224400-120226200	Enhancers	NHLF	lung
31	chr11:120224400-120229400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:120224400-120232200	Weak transcription	Fetal Heart	heart
33	chr11:120224600-120225800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:120224800-120225600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:120224800-120226000	Enhancers	Fetal Kidney	kidney
36	chr11:120224800-120231400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:120224800-120248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:120224800-120260800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:120225000-120225600	Weak transcription	NH-A	brain
40	chr11:120225000-120225600	Weak transcription	Osteobl	bone
41	chr11:120225000-120225800	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr11:120225000-120225800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:120225000-120226000	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr11:120225000-120229600	Weak transcription	Esophagus	oesophagus
45	chr11:120225000-120229600	Weak transcription	K562	blood
46	chr11:120225000-120248200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:120225200-120226000	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr11:120225200-120226200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:120225200-120227800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:120225200-120227800	Weak transcription	Lung	lung

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