Variant report

Variant	rs536909630
Chromosome Location	chr13:84712998-84712999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1035493	chr13:84683545-84779862	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900687	chr13:84691001-84714655	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv562557	chr13:84695884-84714655	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2561636	chr13:84711777-84713305	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84705600-84713000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:84711600-84714600	Enhancers	Dnd41	blood
3	chr13:84711600-84716600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr13:84711800-84713000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:84711800-84713600	Weak transcription	HMEC	breast
6	chr13:84712000-84713600	Weak transcription	NHEK	skin
7	chr13:84712000-84714200	Enhancers	Primary hematopoietic stem cells	blood
8	chr13:84712000-84715400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:84712600-84713200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr13:84712600-84713400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr13:84712600-84715400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr13:84712800-84713600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr13:84712800-84714600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr13:84712800-84715400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links