Variant report

Variant	rs536981061
Chromosome Location	chr2:32154721-32154722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:32154707..32157103-chr2:32390567..32392832,2	K562	blood:
2	chr2:32153176..32157787-chr2:32159365..32162125,4	K562	blood:

Variant related genes	Relation type
ENSG00000152683	Chromatin interaction
ENSG00000272716	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv508718	chr2:32154215-32172810	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32061600-32172800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:32075800-32170000	Weak transcription	Aorta	Aorta
3	chr2:32086600-32174400	Weak transcription	NHLF	lung
4	chr2:32088000-32157600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr2:32089400-32160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr2:32099600-32193000	Weak transcription	Hela-S3	cervix
7	chr2:32107200-32167600	Weak transcription	Left Ventricle	heart
8	chr2:32116200-32173000	Weak transcription	HSMMtube	muscle
9	chr2:32116800-32166200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr2:32116800-32169400	Weak transcription	Small Intestine	intestine
11	chr2:32116800-32182200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr2:32117000-32205200	Weak transcription	NH-A	brain
13	chr2:32118600-32170600	Weak transcription	Gastric	stomach
14	chr2:32119200-32181400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:32126200-32170400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr2:32127400-32160400	Weak transcription	Thymus	Thymus
17	chr2:32127400-32190200	Weak transcription	Lung	lung
18	chr2:32127600-32156000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr2:32127600-32165600	Weak transcription	Dnd41	blood
20	chr2:32127800-32169800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr2:32128400-32170200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:32130200-32165800	Weak transcription	Esophagus	oesophagus
23	chr2:32132400-32183000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:32133600-32157200	Weak transcription	HUVEC	blood vessel
25	chr2:32133800-32157600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:32134200-32159200	Weak transcription	Primary T cells from cord blood	blood
27	chr2:32134200-32167600	Weak transcription	Brain Germinal Matrix	brain
28	chr2:32134600-32166800	Weak transcription	Colon Smooth Muscle	Colon
29	chr2:32136600-32188800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:32137000-32167000	Weak transcription	A549	lung
31	chr2:32137000-32168000	Weak transcription	Adipose Nuclei	Adipose
32	chr2:32137000-32170000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:32137000-32189200	Weak transcription	Fetal Kidney	kidney
34	chr2:32137200-32166200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr2:32137200-32167600	Weak transcription	Ovary	ovary
36	chr2:32137600-32168000	Weak transcription	Fetal Muscle Leg	muscle
37	chr2:32139200-32173600	Weak transcription	Brain Hippocampus Middle	brain
38	chr2:32143000-32166800	Weak transcription	NHDF-Ad	bronchial
39	chr2:32143000-32172000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr2:32143400-32161400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr2:32143400-32167200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr2:32145000-32166400	Weak transcription	Fetal Lung	lung
43	chr2:32145000-32183000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr2:32145200-32154800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:32145200-32164800	Weak transcription	NHEK	skin
46	chr2:32145200-32165600	Weak transcription	Fetal Intestine Large	intestine
47	chr2:32145200-32167000	Weak transcription	Osteobl	bone
48	chr2:32145200-32167600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:32145200-32167600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr2:32145200-32170200	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links