Variant report

Variant	rs537015421
Chromosome Location	chr9:103189196-103189197
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:267)
CpG islands
(count:122)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:267 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr9:103189172-103189492	K562	blood:	n/a	chr9:103189411-103189422
2	RFX5	chr9:103188826-103189392	K562	blood:	n/a	n/a
3	MAX	chr9:103188564-103189602	HCT-116	colon:	n/a	chr9:103188955-103188964
4	TAF1	chr9:103188755-103189688	H1-hESC	embryonic stem cell:	n/a	n/a
5	E2F4	chr9:103188915-103189273	MCF10A-Er-Src	breast:	n/a	chr9:103189157-103189164
6	POLR2A	chr9:103188735-103190414	HUVEC	blood vessel:	n/a	n/a
7	POLR2A	chr9:103188795-103189456	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr9:103188739-103189695	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr9:103188753-103189442	PFSK-1	brain:	n/a	n/a
10	MYBL2	chr9:103188790-103189338	HepG2	liver:	n/a	n/a
11	POLR2A	chr9:103188818-103190157	MCF-7	breast:	n/a	n/a
12	CEBPD	chr9:103189102-103189484	HepG2	liver:	n/a	n/a
13	JUND	chr9:103188781-103190307	A549	lung:	n/a	chr9:103188954-103188966 chr9:103188956-103188964 chr9:103188955-103188965 chr9:103188955-103188965 chr9:103188954-103188965
14	ZKSCAN1	chr9:103188900-103189555	Hela-S3	cervix:	n/a	n/a
15	ZBTB7A	chr9:103189041-103189547	K562	blood:	n/a	n/a
16	EGR1	chr9:103189158-103189896	K562	blood:	n/a	chr9:103189534-103189548
17	MAZ	chr9:103188809-103190287	Hela-S3	cervix:	n/a	chr9:103188955-103188964
18	MXI1	chr9:103188017-103189727	SK-N-SH	brain:	n/a	n/a
19	REST	chr9:103188732-103189308	A549	lung:	n/a	n/a
20	MAX	chr9:103189010-103189531	H1-hESC	embryonic stem cell:	n/a	n/a
21	MXI1	chr9:103188739-103189651	HepG2	liver:	n/a	n/a
22	BHLHE40	chr9:103188917-103189625	GM12878	blood:	n/a	chr9:103189368-103189384
23	YY1	chr9:103188951-103189463	ECC-1	luminal epithelium:	n/a	chr9:103189368-103189382
24	POLR2A	chr9:103188402-103189449	PBDE	blood:	n/a	n/a
25	SIN3AK20	chr9:103189195-103189696	K562	blood:	n/a	n/a
26	IRF1	chr9:103188546-103189434	K562	blood:	n/a	chr9:103188955-103188964 chr9:103189386-103189395
27	ZBTB7A	chr9:103189185-103189471	HepG2	liver:	n/a	n/a
28	TBL1XR1	chr9:103188841-103189463	GM12878	blood:	n/a	n/a
29	MAZ	chr9:103189125-103190223	GM12878	blood:	n/a	n/a
30	SIX5	chr9:103189055-103189338	A549	lung:	n/a	n/a
31	POLR2A	chr9:103188563-103190189	K562	blood:	n/a	n/a
32	ZNF143	chr9:103189186-103190182	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr9:103188791-103189586	HL-60	blood:	n/a	n/a
34	POLR2A	chr9:103188391-103189378	U87	brain:	n/a	n/a
35	POLR2A	chr9:103188753-103189754	MCF-7	breast:	n/a	n/a
36	TCF7L2	chr9:103188745-103189664	HCT-116	colon:	n/a	chr9:103188956-103188965
37	RFX5	chr9:103188807-103189226	HepG2	liver:	n/a	n/a
38	JUN	chr9:103188772-103189718	K562	blood:	n/a	chr9:103188954-103188966 chr9:103188956-103188964 chr9:103188955-103188965 chr9:103188955-103188965
39	FOSL2	chr9:103188602-103189380	A549	lung:	n/a	chr9:103188954-103188966 chr9:103188956-103188964 chr9:103188955-103188965 chr9:103188955-103188965
40	TCF12	chr9:103188530-103189539	A549	lung:	n/a	n/a
41	RCOR1	chr9:103188510-103190318	K562	blood:	n/a	n/a
42	ZNF143	chr9:103188761-103189415	K562	blood:	n/a	n/a
43	RAD21	chr9:103188837-103189368	Hela-S3	cervix:	n/a	n/a
44	EP300	chr9:103188618-103189490	K562	blood:	n/a	chr9:103189370-103189379 chr9:103188788-103188802
45	POLR2A	chr9:103188888-103189509	MCF-7	breast:	n/a	n/a
46	POLR2A	chr9:103188638-103190214	K562	blood:	n/a	n/a
47	EP300	chr9:103188752-103189220	GM12878	blood:	n/a	chr9:103188788-103188802
48	JUND	chr9:103188586-103189449	HCT-116	colon:	n/a	chr9:103188954-103188966 chr9:103188956-103188964 chr9:103188955-103188965 chr9:103188955-103188965 chr9:103188954-103188965
49	POLR2A	chr9:103188869-103190111	GM15510	blood:	n/a	n/a
50	ZBTB7A	chr9:103189187-103189687	K562	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:103189158-103189208	HEK293	kidney:	embryo
2	chr9:103189168-103189218	SK-N-SH_RA	brain:	n/a
3	chr9:103189158-103189208	GM19239	blood:	n/a
4	chr9:103189168-103189218	GM12878	blood:	n/a
5	chr9:103189158-103189208	MCF10A-Er-Src	breast:	n/a
6	chr9:103189158-103189208	Jurkat	blood:	n/a
7	chr9:103189168-103189218	HRCEpiC	kidney:	n/a
8	chr9:103189158-103189208	HMEC	breast:	n/a
9	chr9:103189158-103189208	HL-60	blood:	n/a
10	chr9:103189158-103189208	Hela-S3	cervix:	n/a
11	chr9:103189168-103189218	GM06990	blood:	n/a
12	chr9:103189158-103189208	NH-A	brain:	n/a
13	chr9:103189168-103189218	HCM	heart:	n/a
14	chr9:103189168-103189218	HCPEpiC	choroid plexus:	n/a
15	chr9:103189158-103189208	CMK	blood:	n/a
16	chr9:103189168-103189218	LNCaP	prostate:	n/a
17	chr9:103189168-103189218	HEEpiC	esophagus:	n/a
18	chr9:103189158-103189208	GM12878	blood:	n/a
19	chr9:103189158-103189208	RPTEC	kidney:	n/a
20	chr9:103189168-103189218	AoSMC	blood vessel:	n/a
21	chr9:103189168-103189218	SK-N-SH	brain:	n/a
22	chr9:103189168-103189218	CMK	blood:	n/a
23	chr9:103189168-103189218	PANC-1	pancreas:	n/a
24	chr9:103189168-103189218	AG09309	skin:	n/a
25	chr9:103189158-103189208	GM12892	blood:	n/a
26	chr9:103189168-103189218	U87	brain:	n/a
27	chr9:103189158-103189208	HNPCEpiC	eye:	n/a
28	chr9:103189158-103189208	HCF	heart:	n/a
29	chr9:103189158-103189208	HEEpiC	esophagus:	n/a
30	chr9:103189158-103189208	ECC-1	luminal epithelium:	n/a
31	chr9:103189158-103189208	HPAEpiC	pulmonary alveolar:	n/a
32	chr9:103189158-103189208	HAEpiC	amniotic membrane:	n/a
33	chr9:103189158-103189208	PANC-1	pancreas:	n/a
34	chr9:103189168-103189218	HRE	kidney:	n/a
35	chr9:103189168-103189218	AG10803	skin:	n/a
36	chr9:103189158-103189208	PFSK-1	brain:	n/a
37	chr9:103189168-103189218	NT2-D1	testis:	n/a
38	chr9:103189168-103189218	MCF10A-Er-Src	breast:	n/a
39	chr9:103189158-103189208	U87	brain:	n/a
40	chr9:103189158-103189208	AG09319	gingival:	n/a
41	chr9:103189168-103189218	NHDF-neo	bronchial:	n/a
42	chr9:103189168-103189218	AG04449	skin:	fetal
43	chr9:103189168-103189218	Hepatocyte	liver:	n/a
44	chr9:103189168-103189218	PrEC	prostate:	n/a
45	chr9:103189158-103189208	LNCaP	prostate:	n/a
46	chr9:103189168-103189218	IMR90	lung:	fetal
47	chr9:103189158-103189208	SKMC	muscle:	n/a
48	chr9:103189168-103189218	GM12892	blood:	n/a
49	chr9:103189158-103189208	HRPEpiC	eye:	n/a
50	chr9:103189158-103189208	HepG2	liver:	n/a

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:102580552..102583439-chr9:103187663..103189259,2	MCF-7	breast:
2	chr9:103188255..103190992-chr9:103234182..103236159,2	MCF-7	breast:
3	chr9:102587074..102589303-chr9:103188855..103190578,2	MCF-7	breast:
4	chr12:56510216..56511089-chr9:103188467..103189444,2	Hela-S3	cervix:
5	chr9:103187168..103189222-chr9:103356564..103358499,2	K562	blood:
6	chr11:62608651..62609649-chr9:103188677..103189695,4	Hela-S3	cervix:
7	chr6:3000150..3000654-chr9:103188910..103189655,2	Hela-S3	cervix:
8	chr9:103108916..103110922-chr9:103189088..103192439,3	MCF-7	breast:
9	chr9:103108891..103111879-chr9:103188016..103191736,3	K562	blood:
10	chr3:57678348..57678964-chr9:103188755..103189418,2	Hela-S3	cervix:
11	chr9:103113279..103116752-chr9:103187119..103190910,6	K562	blood:
12	chr9:103182521..103185122-chr9:103187370..103189359,3	K562	blood:
13	chr9:103187999..103190908-chr9:103233595..103236918,6	MCF-7	breast:
14	chr9:102581117..102583683-chr9:103188604..103191068,4	K562	blood:
15	chr9:103112743..103119519-chr9:103186928..103191502,9	MCF-7	breast:
16	chr9:103112020..103116853-chr9:103187928..103193300,12	MCF-7	breast:
17	chr9:103113751..103117482-chr9:103187755..103190910,6	K562	blood:

No data

Variant related genes	Relation type
MSANTD3	TF binding region
MSANTD3	CpG island
ENSG00000241933	Chromatin interaction
ENSG00000124588	Chromatin interaction
ENSG00000229117	Chromatin interaction
ENSG00000136891	Chromatin interaction
ENSG00000119508	Chromatin interaction
ENSG00000174839	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000241697	Chromatin interaction
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3443911	chr9:103188156-103191004	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	esv3369267	chr9:103188781-103190679	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103188400-103189200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:103188400-103189200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr9:103188400-103189200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:103188400-103189200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:103188400-103189200	Flanking Active TSS	HUVEC	blood vessel
6	chr9:103188400-103189800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:103188400-103190200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:103188400-103190200	Active TSS	HepG2	liver
9	chr9:103188400-103190600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr9:103188400-103191000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:103188600-103189200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr9:103188600-103189200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:103188600-103189200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr9:103188600-103189200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:103188600-103189200	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr9:103188600-103189200	Flanking Active TSS	Liver	Liver
17	chr9:103188600-103189200	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr9:103188600-103189200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr9:103188600-103189200	Flanking Active TSS	Fetal Lung	lung
20	chr9:103188600-103189200	Flanking Active TSS	Fetal Muscle Leg	muscle
21	chr9:103188600-103189200	Flanking Active TSS	Placenta	Placenta
22	chr9:103188600-103189200	Flanking Active TSS	Fetal Stomach	stomach
23	chr9:103188600-103189200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr9:103188600-103189200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr9:103188600-103189200	Flanking Active TSS	GM12878-XiMat	blood
26	chr9:103188600-103189200	Flanking Active TSS	NH-A	brain
27	chr9:103188600-103189200	Flanking Active TSS	NHLF	lung
28	chr9:103188600-103189200	Flanking Active TSS	Osteobl	bone
29	chr9:103188600-103189400	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr9:103188600-103190000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:103188600-103190200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:103188600-103190200	Active TSS	Fetal Intestine Small	intestine
33	chr9:103188600-103190200	Active TSS	Stomach Smooth Muscle	stomach
34	chr9:103188600-103190400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr9:103188600-103190400	Active TSS	Fetal Kidney	kidney
36	chr9:103188600-103190400	Active TSS	Thymus	Thymus
37	chr9:103188600-103190400	Active TSS	A549	lung
38	chr9:103188600-103190600	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr9:103188600-103190600	Active TSS	Fetal Brain Male	brain
40	chr9:103188600-103190800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:103188600-103190800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr9:103188600-103190800	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr9:103188600-103191000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr9:103188600-103191000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr9:103188800-103189200	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:103188800-103189200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
47	chr9:103188800-103189200	Flanking Active TSS	Primary B cells from peripheral blood	blood
48	chr9:103188800-103189200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr9:103188800-103189200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr9:103188800-103189200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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