Variant report

Variant	rs537020618
Chromosome Location	chr7:66026507-66026508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:66026407-66026578	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000177418	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	esv3447484	chr7:65909457-66033145	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	esv3377926	chr7:65934493-66051484	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	nsv888327	chr7:65938980-66029429	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	esv3423847	chr7:65941210-66054107	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv824147	chr7:66026159-66030478	Weak transcription Genic enhancers Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv824148	chr7:66026233-66030478	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv824149	chr7:66026233-66030827	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66004400-66052600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:66004800-66037200	Weak transcription	Psoas Muscle	Psoas
3	chr7:66008600-66056000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:66009000-66031400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:66009200-66029400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:66011000-66037000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:66011600-66045000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:66013000-66031800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:66018400-66029000	Weak transcription	Primary B cells from cord blood	blood
10	chr7:66019800-66036600	Weak transcription	HUVEC	blood vessel
11	chr7:66019800-66037400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:66020000-66029000	Weak transcription	HSMM	muscle
13	chr7:66020000-66030400	Weak transcription	Fetal Kidney	kidney
14	chr7:66020000-66031200	Weak transcription	Hela-S3	cervix
15	chr7:66020000-66036600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:66020000-66037400	Weak transcription	Small Intestine	intestine
17	chr7:66020600-66030600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:66020600-66031200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:66021200-66031200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:66021800-66056400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:66022000-66039000	Weak transcription	Aorta	Aorta
22	chr7:66022400-66030600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:66022600-66029000	Weak transcription	NHEK	skin
24	chr7:66022600-66031400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:66022600-66035200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:66023000-66030400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:66023000-66031200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:66023000-66034600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:66023000-66036400	Weak transcription	Brain Substantia Nigra	brain
30	chr7:66023000-66036600	Weak transcription	Brain Anterior Caudate	brain
31	chr7:66023000-66036600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:66023000-66037400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr7:66023000-66040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:66023000-66041800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr7:66023200-66027400	Strong transcription	Fetal Stomach	stomach
36	chr7:66023200-66031000	Weak transcription	Left Ventricle	heart
37	chr7:66023200-66031400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:66023200-66036800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr7:66023200-66043800	Weak transcription	Fetal Heart	heart
40	chr7:66023200-66044400	Weak transcription	Right Atrium	heart
41	chr7:66023200-66048400	Weak transcription	Colon Smooth Muscle	Colon
42	chr7:66023200-66049800	Weak transcription	Stomach Mucosa	stomach
43	chr7:66023200-66055400	Weak transcription	Fetal Brain Male	brain
44	chr7:66023400-66026600	Strong transcription	Liver	Liver
45	chr7:66023600-66042200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr7:66023800-66026600	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr7:66023800-66031600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr7:66024000-66028600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:66024000-66028800	Weak transcription	Fetal Lung	lung
50	chr7:66024000-66029000	Weak transcription	Ovary	ovary

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