Variant report

Variant	rs537028222
Chromosome Location	chr2:11055625-11055626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11054784..11057728-chr2:11061728..11064590,3	MCF-7	breast:
2	chr2:11054478..11056999-chr2:11265255..11267127,2	MCF-7	breast:
3	chr2:11053891..11056006-chr2:11074074..11075819,2	MCF-7	breast:
4	chr2:11053991..11056052-chr2:11065201..11067671,2	MCF-7	breast:
5	chr2:11055046..11056818-chr2:11058961..11061152,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580969	chr2:11033567-11081645	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv873662	chr2:11035430-11061156	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv521177	chr2:11040146-11066699	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817618	chr2:11055298-11075754	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv469438	chr2:11055298-11085744	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv580970	chr2:11055298-11085744	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11051600-11056200	Active TSS	Brain Angular Gyrus	brain
2	chr2:11053600-11058200	Enhancers	Fetal Brain Male	brain
3	chr2:11053600-11058800	Weak transcription	Pancreas	Pancrea
4	chr2:11053800-11056000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr2:11053800-11058800	Weak transcription	Gastric	stomach
6	chr2:11054000-11056600	Active TSS	Brain Anterior Caudate	brain
7	chr2:11054200-11056400	Active TSS	Brain Germinal Matrix	brain
8	chr2:11054200-11063600	Enhancers	Fetal Thymus	thymus
9	chr2:11054400-11072400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:11054600-11058800	Weak transcription	Hela-S3	cervix
11	chr2:11054600-11059000	Weak transcription	Right Ventricle	heart
12	chr2:11054800-11058800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:11055000-11056000	Active TSS	Brain Cingulate Gyrus	brain
14	chr2:11055000-11056200	Active TSS	Brain Hippocampus Middle	brain
15	chr2:11055000-11056200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:11055200-11056400	Flanking Active TSS	Fetal Brain Female	brain
17	chr2:11055200-11069800	Weak transcription	A549	lung
18	chr2:11055400-11056000	Enhancers	Fetal Muscle Leg	muscle
19	chr2:11055400-11056400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:11055400-11056400	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr2:11055400-11056600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:11055600-11055800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
23	chr2:11055600-11055800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
24	chr2:11055600-11056200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:11055600-11056400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr2:11055600-11056600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links