Variant report

Variant	rs537057914
Chromosome Location	chr9:100996325-100996326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100967742..100968255-chr9:100996195..100996846,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv1810342	chr9:100995758-101006339	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100955800-101003200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:100961400-101001400	Weak transcription	Right Atrium	heart
3	chr9:100968400-100997600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr9:100968600-101010400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:100968800-100998000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:100968800-101011000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr9:100969400-101004800	Weak transcription	Brain Germinal Matrix	brain
8	chr9:100969600-100997200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:100970200-101001600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:100974800-101010600	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:100976400-100998800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:100980200-101010200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:100981800-101010400	Weak transcription	Fetal Thymus	thymus
14	chr9:100982800-101004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:100983000-101007200	Weak transcription	Fetal Brain Male	brain
16	chr9:100983200-100996600	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:100983200-100997600	Weak transcription	Fetal Brain Female	brain
18	chr9:100983400-101006200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:100985600-100998200	Genic enhancers	Fetal Intestine Small	intestine
20	chr9:100985800-101002800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:100986000-101006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:100986200-100997600	Weak transcription	HUVEC	blood vessel
23	chr9:100986200-100998800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr9:100986200-100999000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr9:100987000-100997200	Strong transcription	Lung	lung
26	chr9:100987000-100997800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr9:100987200-100996400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr9:100987200-100996800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr9:100987200-100997400	Strong transcription	Primary T cells from cord blood	blood
30	chr9:100987800-100998200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:100989600-101006400	Weak transcription	Psoas Muscle	Psoas
32	chr9:100989600-101016000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:100989800-100997600	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:100990800-100996400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:100991400-101006200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr9:100991400-101006200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:100991400-101006400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:100991400-101010600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr9:100991400-101015400	Weak transcription	Brain Anterior Caudate	brain
40	chr9:100991600-100996400	Weak transcription	Small Intestine	intestine
41	chr9:100991600-101003600	Weak transcription	Colonic Mucosa	Colon
42	chr9:100991800-101011400	Weak transcription	Right Ventricle	heart
43	chr9:100992200-101003000	Weak transcription	Primary B cells from cord blood	blood
44	chr9:100992200-101012800	Weak transcription	Brain Substantia Nigra	brain
45	chr9:100992200-101016000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:100992800-100997000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr9:100992800-101006200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr9:100993000-100997200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:100993200-101010200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:100993400-100997600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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