Variant report

Variant	rs537113918
Chromosome Location	chr1:85747972-85747973
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:85747833-85748061	HepG2	liver:	n/a	chr1:85747915-85747926
2	CTCF	chr1:85747896-85748721	A549	lung:	n/a	chr1:85748353-85748362
3	CTCF	chr1:85747920-85748070	Caco-2	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:85747755..85748502-chr1:85773895..85774432,2	MCF-7	breast:
2	chr1:85742898..85744863-chr1:85746512..85748542,2	MCF-7	breast:
3	chr1:85740526..85742722-chr1:85746661..85748660,2	MCF-7	breast:
4	chr1:85743465..85746291-chr1:85746776..85749038,2	MCF-7	breast:
5	chr1:85741905..85744580-chr1:85747619..85751624,6	K562	blood:
6	chr1:85739297..85743309-chr1:85744628..85748559,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264380	TF binding region
ENSG00000142867	Chromatin interaction
ENSG00000223653	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3450265	chr1:85747914-85749962	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85742800-85763000	Weak transcription	Ovary	ovary
2	chr1:85743000-85749200	Weak transcription	Fetal Stomach	stomach
3	chr1:85743000-85749200	Weak transcription	Psoas Muscle	Psoas
4	chr1:85743000-85773600	Weak transcription	Right Atrium	heart
5	chr1:85743200-85748000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:85743200-85748200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:85743200-85752000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:85743400-85748000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:85743400-85748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:85745200-85753600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:85745400-85749000	Weak transcription	A549	lung
12	chr1:85745400-85749200	Weak transcription	Colonic Mucosa	Colon
13	chr1:85745400-85749400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr1:85745600-85748000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr1:85745600-85748000	Weak transcription	HepG2	liver
16	chr1:85745600-85748200	Weak transcription	Esophagus	oesophagus
17	chr1:85745600-85749000	Weak transcription	Stomach Mucosa	stomach
18	chr1:85745600-85749200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:85745600-85749200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:85745600-85749400	Weak transcription	Gastric	stomach
21	chr1:85745600-85749400	Weak transcription	Pancreas	Pancrea
22	chr1:85745800-85749000	Weak transcription	HMEC	breast
23	chr1:85745800-85749200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:85745800-85749400	Weak transcription	Lung	lung
25	chr1:85745800-85749600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr1:85746000-85748000	Weak transcription	NHEK	skin
27	chr1:85746800-85749000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:85746800-85753600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:85747000-85749200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:85747000-85749600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr1:85747200-85749200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:85747600-85749400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:85747600-85750200	Weak transcription	Primary B cells from cord blood	blood
34	chr1:85747800-85748600	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr1:85747800-85748600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr1:85747800-85748600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr1:85747800-85750000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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