Variant report

Variant	rs537171520
Chromosome Location	chr6:121801420-121801421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr6:121800540-121801847	HCT-116	colon:	n/a	n/a
2	SETDB1	chr6:121800568-121801678	U2OS	brain:	n/a	n/a
3	FOXA2	chr6:121801305-121801651	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:121801389-121801439	HCM	heart:	n/a
2	chr6:121801389-121801439	HCT-116	colon:	n/a
3	chr6:121801389-121801439	SKMC	muscle:	n/a
4	chr6:121801389-121801439	HL-60	blood:	n/a
5	chr6:121801389-121801439	HAEpiC	amniotic membrane:	n/a
6	chr6:121801389-121801439	Caco-2	colon:	n/a
7	chr6:121801389-121801439	HRE	kidney:	n/a
8	chr6:121801389-121801439	Hepatocyte	liver:	n/a
9	chr6:121801389-121801439	HRPEpiC	eye:	n/a
10	chr6:121801389-121801439	HMEC	breast:	n/a
11	chr6:121801389-121801439	ProgFib	skin:	n/a
12	chr6:121801389-121801439	HepG2	liver:	n/a
13	chr6:121801389-121801439	U87	brain:	n/a
14	chr6:121801389-121801439	HEK293	kidney:	embryo
15	chr6:121801389-121801439	GM12878	blood:	n/a
16	chr6:121801389-121801439	SK-N-MC	brain:	n/a
17	chr6:121801389-121801439	A549	lung:	n/a
18	chr6:121801389-121801439	HEEpiC	esophagus:	n/a
19	chr6:121801389-121801439	NH-A	brain:	n/a
20	chr6:121801389-121801439	IMR90	lung:	fetal
21	chr6:121801389-121801439	GM06990	blood:	n/a
22	chr6:121801389-121801439	NT2-D1	testis:	n/a
23	chr6:121801389-121801439	H1-hESC	embryonic stem cell:	embryo
24	chr6:121801389-121801439	NB4	blood:	n/a
25	chr6:121801389-121801439	GM12891	blood:	n/a
26	chr6:121801389-121801439	K562	blood:	n/a
27	chr6:121801389-121801439	HUVEC	blood vessel:	n/a
28	chr6:121801389-121801439	CMK	blood:	n/a
29	chr6:121801389-121801439	GM12892	blood:	n/a
30	chr6:121801389-121801439	T-47D	breast:	n/a
31	chr6:121801389-121801439	SK-N-SH_RA	brain:	n/a
32	chr6:121801389-121801439	MCF10A-Er-Src	breast:	n/a
33	chr6:121801389-121801439	AG09319	gingival:	n/a
34	chr6:121801389-121801439	AG04450	lung:	fetal
35	chr6:121801389-121801439	AG09309	skin:	n/a
36	chr6:121801389-121801439	ovcar-3	ovarian:	n/a
37	chr6:121801389-121801439	LNCaP	prostate:	n/a
38	chr6:121801389-121801439	HNPCEpiC	eye:	n/a
39	chr6:121801389-121801439	GM19239	blood:	n/a
40	chr6:121801389-121801439	NHBE	bronchial:	n/a
41	chr6:121801389-121801439	Jurkat	blood:	n/a
42	chr6:121801389-121801439	MCF-7	breast:	n/a
43	chr6:121801389-121801439	HCF	heart:	n/a
44	chr6:121801389-121801439	AG10803	skin:	n/a
45	chr6:121801389-121801439	PANC-1	pancreas:	n/a
46	chr6:121801389-121801439	HIPEpiC	eye:	n/a
47	chr6:121801389-121801439	ECC-1	luminal epithelium:	n/a
48	chr6:121801389-121801439	AG04449	skin:	fetal
49	chr6:121801389-121801439	AoSMC	blood vessel:	n/a
50	chr6:121801389-121801439	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
ENSG00000219784	TF binding region
ENSG00000219784	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966657	chr6:121786080-121806494	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121800800-121801800	Active TSS	A549	lung
2	chr6:121800800-121802000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:121801000-121801600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:121801000-121803200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:121801000-121806200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:121801200-121803600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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