Variant report

Variant	rs537260445
Chromosome Location	chr6:33332343-33332344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33286727..33289149-chr6:33332199..33333898,2	MCF-7	breast:
2	chr6:33331065..33333625-chr6:33356346..33358635,2	K562	blood:
3	chr6:33328288..33333241-chr6:33333249..33338819,6	K562	blood:
4	chr6:33329577..33332620-chr6:33339048..33342098,3	K562	blood:
5	chr6:33285523..33287607-chr6:33332179..33334621,2	K562	blood:

Variant related genes	Relation type
ENSG00000236104	Chromatin interaction
ENSG00000228285	Chromatin interaction
ENSG00000204209	Chromatin interaction
ENSG00000225644	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv970110	chr6:33331311-33342922	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33324400-33332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33324600-33340200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:33331400-33332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:33331800-33332400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:33331800-33333200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:33331800-33333600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:33332000-33332400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:33332000-33332600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:33332000-33332800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:33332000-33332800	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:33332000-33333200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:33332000-33333200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:33332000-33333200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:33332000-33333600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:33332200-33332400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:33332200-33332400	Enhancers	Fetal Kidney	kidney
17	chr6:33332200-33332400	Enhancers	NHLF	lung
18	chr6:33332200-33332400	Enhancers	Osteobl	bone
19	chr6:33332200-33332600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:33332200-33332600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:33332200-33332600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:33332200-33332600	Flanking Active TSS	K562	blood
23	chr6:33332200-33332800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:33332200-33332800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:33332200-33332800	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr6:33332200-33332800	Enhancers	A549	lung
27	chr6:33332200-33333000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:33332200-33333000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:33332200-33333000	Enhancers	Hela-S3	cervix
30	chr6:33332200-33333200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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