Variant report

Variant	rs537266720
Chromosome Location	chr3:134255840-134255841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134246398..134248873-chr3:134254340..134256728,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	esv3431813	chr3:134255579-134256174	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134225200-134256200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:134230800-134256000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:134236200-134256400	Weak transcription	A549	lung
4	chr3:134236200-134267000	Weak transcription	HSMM	muscle
5	chr3:134237000-134256000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:134237000-134256200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:134242600-134256200	Weak transcription	NHEK	skin
8	chr3:134244800-134256000	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:134244800-134269600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:134246000-134256200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:134246000-134256200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:134246200-134280800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:134246400-134256000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:134246400-134256000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:134246400-134265400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:134246600-134256400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:134246600-134269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:134246600-134281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:134247600-134256200	Weak transcription	Right Ventricle	heart
20	chr3:134248600-134256400	Weak transcription	Brain Germinal Matrix	brain
21	chr3:134249400-134265200	Weak transcription	Osteobl	bone
22	chr3:134249600-134268600	Weak transcription	Fetal Kidney	kidney
23	chr3:134249800-134265200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:134250000-134256000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:134250000-134256000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:134250000-134256000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:134250200-134256200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:134250400-134256000	Weak transcription	HepG2	liver
29	chr3:134250400-134256200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:134250400-134269400	Weak transcription	Psoas Muscle	Psoas
31	chr3:134250400-134269600	Weak transcription	HMEC	breast
32	chr3:134250400-134282000	Weak transcription	Stomach Mucosa	stomach
33	chr3:134250600-134257200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr3:134250600-134259000	Strong transcription	Fetal Thymus	thymus
35	chr3:134250800-134256200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:134250800-134265200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr3:134251000-134256000	Weak transcription	Fetal Brain Male	brain
38	chr3:134251000-134256400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr3:134251000-134268400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:134251400-134257600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr3:134251400-134258200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr3:134251400-134258400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:134251400-134258400	Strong transcription	Dnd41	blood
44	chr3:134251400-134259400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:134251600-134257000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr3:134251600-134257600	Strong transcription	Primary hematopoietic stem cells	blood
47	chr3:134251600-134257600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr3:134251600-134257800	Strong transcription	Primary B cells from cord blood	blood
49	chr3:134251600-134257800	Strong transcription	Liver	Liver
50	chr3:134251600-134258400	Strong transcription	Adipose Nuclei	Adipose

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