Variant report

Variant	rs537298833
Chromosome Location	chr14:81901884-81901885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:81684581..81688465-chr14:81899255..81904181,10	K562	blood:
2	chr14:81789758..81792094-chr14:81900694..81903096,3	MCF-7	breast:
3	chr14:81684220..81688666-chr14:81897892..81904337,14	K562	blood:
4	chr14:81850220..81853055-chr14:81900012..81901931,2	K562	blood:
5	chr14:81683389..81688783-chr14:81897521..81903580,11	MCF-7	breast:
6	chr14:81866819..81868444-chr14:81899264..81901997,2	K562	blood:
7	chr14:81768263..81770023-chr14:81899967..81902259,2	K562	blood:
8	chr14:81684709..81688864-chr14:81899235..81906709,16	MCF-7	breast:
9	chr14:81901271..81902197-chr9:83452129..83452649,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction
ENSG00000140022	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv510645	chr14:81874624-81907004	Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	esv1807931	chr14:81878972-81908605	Bivalent Enhancer Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
6	esv1842834	chr14:81878972-81908605	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
7	esv1844298	chr14:81878972-81908605	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
8	esv3442417	chr14:81901624-81904172	Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81900600-81902400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:81900800-81903400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr14:81901000-81902400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:81901000-81903000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr14:81901000-81903600	Bivalent/Poised TSS	Fetal Kidney	kidney
6	chr14:81901200-81902000	Active TSS	Fetal Brain Female	brain
7	chr14:81901200-81902000	Flanking Active TSS	HMEC	breast
8	chr14:81901200-81902200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:81901200-81902200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:81901200-81902600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr14:81901200-81903200	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr14:81901200-81903600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr14:81901400-81902000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
14	chr14:81901400-81902000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr14:81901400-81902000	Flanking Active TSS	Hela-S3	cervix
16	chr14:81901400-81902200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:81901400-81902200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:81901400-81902200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr14:81901400-81902400	Flanking Active TSS	Liver	Liver
20	chr14:81901400-81902400	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
21	chr14:81901400-81902400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
22	chr14:81901400-81903000	Active TSS	Brain Cingulate Gyrus	brain
23	chr14:81901400-81903200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr14:81901400-81903200	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr14:81901400-81903400	Active TSS	K562	blood
26	chr14:81901400-81903600	Active TSS	Brain Substantia Nigra	brain
27	chr14:81901400-81903600	Active TSS	Right Atrium	heart
28	chr14:81901600-81902000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
29	chr14:81901600-81902000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:81901600-81902000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr14:81901600-81902000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
32	chr14:81901600-81902000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
33	chr14:81901600-81902000	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr14:81901600-81902000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
35	chr14:81901600-81902000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:81901600-81902000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
37	chr14:81901600-81902000	Flanking Bivalent TSS/Enh	Fetal Heart	heart
38	chr14:81901600-81902000	Flanking Bivalent TSS/Enh	A549	lung
39	chr14:81901600-81902200	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr14:81901600-81902200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
41	chr14:81901600-81902200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
42	chr14:81901600-81902400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
43	chr14:81901600-81902400	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr14:81901600-81902400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:81901600-81902400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:81901600-81902400	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr14:81901600-81902400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
48	chr14:81901600-81902400	Flanking Bivalent TSS/Enh	Placenta	Placenta
49	chr14:81901600-81902400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
50	chr14:81901600-81902400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links