Variant report

Variant	rs537325851
Chromosome Location	chr11:66980563-66980564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr11:66980519-66980639	GM12878	blood:	n/a	n/a
2	EBF1	chr11:66980558-66980870	GM12878	blood:	n/a	n/a
3	RUNX3	chr11:66980524-66981064	GM12878	blood:	n/a	n/a
4	NFIC	chr11:66980559-66981112	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:66980520-66980642	MCF-7	breast:	n/a	n/a
6	STAT3	chr11:66980511-66980734	MCF10A-Er-Src	breast:	n/a	n/a
7	NFYA	chr11:66980383-66980750	GM12878	blood:	n/a	n/a
8	CHD2	chr11:66980546-66980928	GM12878	blood:	n/a	n/a
9	SPI1	chr11:66980366-66981287	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66978777..66981655-chr11:67007674..67010286,2	MCF-7	breast:

Variant related genes	Relation type
KDM2A	TF binding region
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv972951	chr11:66980475-66986736	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
2	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
3	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
7	chr11:66953400-66982800	Weak transcription	Aorta	Aorta
8	chr11:66953400-66982800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:66953800-66982800	Weak transcription	HUVEC	blood vessel
10	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:66954600-66993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:66956400-67005000	Weak transcription	Fetal Heart	heart
13	chr11:66962200-66999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:66962400-66982800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:66962600-66995000	Weak transcription	Psoas Muscle	Psoas
16	chr11:66964000-66982800	Weak transcription	NHEK	skin
17	chr11:66964400-66989400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:66964600-67002400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:66965200-67006400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:66965400-66982800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:66966400-66989400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:66968200-66982800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:66970400-66988800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:66971400-66989200	Strong transcription	Placenta	Placenta
25	chr11:66972400-66989600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr11:66972600-66980600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:66972600-66987800	Strong transcription	Fetal Stomach	stomach
28	chr11:66972600-66989000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:66972800-66981800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:66972800-66987600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:66972800-66988400	Strong transcription	Fetal Intestine Large	intestine
32	chr11:66972800-67002600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr11:66973000-66980600	Strong transcription	Thymus	Thymus
34	chr11:66973000-66989200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:66973000-67005400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:66973400-66988200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:66973600-66982200	Weak transcription	NHDF-Ad	bronchial
38	chr11:66973800-66987800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:66974400-66980800	Strong transcription	Fetal Brain Female	brain
40	chr11:66974400-66988000	Strong transcription	HepG2	liver
41	chr11:66974400-66988200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:66974400-66989000	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:66974600-66980800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:66974600-66989400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:66974600-66993000	Strong transcription	Dnd41	blood
46	chr11:66974600-66993200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:66974600-66993400	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:66974800-66980800	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:66974800-66980800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:66974800-66980800	Strong transcription	Placenta Amnion	Placenta Amnion

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