Variant report

Variant	rs537331506
Chromosome Location	chr11:108098004-108098005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107878756..107880670-chr11:108096496..108098082,2	MCF-7	breast:
2	chr11:108096808..108099357-chr11:108117169..108119073,2	K562	blood:
3	chr11:107878690..107880748-chr11:108096542..108098522,2	K562	blood:
4	chr11:108070782..108073415-chr11:108095744..108098057,2	MCF-7	breast:
5	chr11:108092760..108095657-chr11:108096566..108100675,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166266	Chromatin interaction
ENSG00000149311	Chromatin interaction
ENSG00000149308	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108091800-108098200	Active TSS	Primary T killer memory cells from peripheral blood	blood
2	chr11:108094000-108098200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr11:108094200-108099000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chr11:108094600-108121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:108094800-108100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:108094800-108100400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:108094800-108116000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
9	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:108095000-108100400	Weak transcription	Ovary	ovary
11	chr11:108095000-108121400	Weak transcription	Colonic Mucosa	Colon
12	chr11:108095200-108099000	Weak transcription	Fetal Intestine Large	intestine
13	chr11:108095200-108099000	Weak transcription	Placenta	Placenta
14	chr11:108095200-108100400	Weak transcription	Gastric	stomach
15	chr11:108095200-108106800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:108095400-108099000	Weak transcription	Adipose Nuclei	Adipose
17	chr11:108095400-108099000	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:108095400-108099400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:108095400-108099800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:108095400-108100400	Weak transcription	Fetal Stomach	stomach
21	chr11:108095400-108103800	Weak transcription	Right Ventricle	heart
22	chr11:108095400-108119800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:108095600-108098400	Weak transcription	Fetal Lung	lung
24	chr11:108095600-108099000	Weak transcription	HSMMtube	muscle
25	chr11:108095600-108099200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:108095600-108100600	Weak transcription	Aorta	Aorta
27	chr11:108095800-108098200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:108095800-108099000	Weak transcription	NH-A	brain
29	chr11:108095800-108099400	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:108095800-108100200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:108095800-108102400	Weak transcription	Fetal Kidney	kidney
32	chr11:108095800-108119800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:108095800-108122400	Weak transcription	Brain Angular Gyrus	brain
34	chr11:108096000-108098400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:108096000-108099200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:108096000-108100400	Weak transcription	NHEK	skin
37	chr11:108096000-108102600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:108096000-108107800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
40	chr11:108096200-108098200	Weak transcription	Osteobl	bone
41	chr11:108096200-108098600	Weak transcription	HMEC	breast
42	chr11:108096200-108099400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:108096200-108100400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:108096200-108106600	Weak transcription	A549	lung
45	chr11:108096400-108098200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:108096400-108098400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:108096400-108098400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:108096400-108098400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:108096400-108098400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:108096400-108099000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links