Variant report

Variant	rs537352761
Chromosome Location	chr3:53529389-53529390
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv3442278	chr3:53527437-53530285	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3444874	chr3:53527737-53529960	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53527000-53530600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr3:53527400-53530200	Active TSS	Brain Hippocampus Middle	brain
3	chr3:53527400-53530400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:53527400-53530400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr3:53527400-53531000	Active TSS	Brain Cingulate Gyrus	brain
6	chr3:53527600-53529400	Active TSS	Fetal Brain Female	brain
7	chr3:53527600-53529800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
8	chr3:53527600-53530000	Active TSS	Brain Anterior Caudate	brain
9	chr3:53527600-53533000	Enhancers	Fetal Brain Male	brain
10	chr3:53527800-53530000	Active TSS	Aorta	Aorta
11	chr3:53527800-53530000	Active TSS	Fetal Lung	lung
12	chr3:53527800-53530200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr3:53527800-53530200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr3:53527800-53530200	Active TSS	Colon Smooth Muscle	Colon
15	chr3:53527800-53530400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr3:53527800-53530400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr3:53527800-53530400	Active TSS	Fetal Kidney	kidney
18	chr3:53527800-53530600	Active TSS	Brain Angular Gyrus	brain
19	chr3:53527800-53530800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:53528000-53529400	Bivalent/Poised TSS	Thymus	Thymus
21	chr3:53528000-53529600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
22	chr3:53528000-53529800	Bivalent Enhancer	Primary B cells from cord blood	blood
23	chr3:53528000-53530000	Bivalent/Poised TSS	NHLF	lung
24	chr3:53528000-53530400	Active TSS	Brain Substantia Nigra	brain
25	chr3:53528200-53529600	Active TSS	Hela-S3	cervix
26	chr3:53528400-53529400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
27	chr3:53528400-53530000	Bivalent/Poised TSS	Psoas Muscle	Psoas
28	chr3:53528800-53529400	Bivalent/Poised TSS	HSMM	muscle
29	chr3:53528800-53529800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
30	chr3:53528800-53530200	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr3:53529000-53529400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:53529000-53529400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:53529000-53529400	Bivalent Enhancer	Small Intestine	intestine
34	chr3:53529000-53529600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
35	chr3:53529000-53529600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:53529000-53529600	Flanking Active TSS	Liver	Liver
37	chr3:53529000-53529800	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:53529000-53529800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr3:53529000-53529800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:53529000-53529800	Flanking Bivalent TSS/Enh	Left Ventricle	heart
41	chr3:53529000-53529800	Flanking Bivalent TSS/Enh	HepG2	liver
42	chr3:53529000-53530000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr3:53529000-53530000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
44	chr3:53529000-53530000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
45	chr3:53529000-53530000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
46	chr3:53529000-53530000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr3:53529000-53530000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
48	chr3:53529000-53530000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
49	chr3:53529000-53530000	Bivalent Enhancer	Placenta	Placenta
50	chr3:53529000-53530200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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