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Variant report
Variant
rs537367390
Chromosome Location
chr1:73549162-73549163
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:5)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:5 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-FPGT-9
chr1:73549124-73549261
NONHSAT003929
2
lnc-FPGT-9
chr1:73549124-73549261
NONHSAT003931
3
lnc-FPGT-9
chr1:73549124-73549261
NONHSAT003927
4
lnc-FPGT-9
chr1:73549124-73549261
ucscGeneNc_uc001dfx_2
5
lnc-FPGT-9
chr1:73549124-73549261
NONHSAT003928
No data
No data
No data
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv546568
chr1:73529275-73556846
Enhancers Weak transcription Active TSS Flanking Active TSS
Chromatin interactive regionlncRNA
n/a
inside rSNPs
diseases
2
nsv1005356
chr1:73542786-74124065
Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer
TF binding regionCpG islandChromatin interactive regionlncRNA
7 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links