Variant report

Variant	rs537369946
Chromosome Location	chr9:84528281-84528282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:84528281-84528331	HUVEC	blood vessel:	n/a
2	chr9:84528281-84528331	HEEpiC	esophagus:	n/a
3	chr9:84528281-84528331	GM06990	blood:	n/a
4	chr9:84528281-84528331	T-47D	breast:	n/a
5	chr9:84528281-84528331	HCF	heart:	n/a
6	chr9:84528281-84528331	A549	lung:	n/a
7	chr9:84528281-84528331	PANC-1	pancreas:	n/a
8	chr9:84528281-84528331	MCF10A-Er-Src	breast:	n/a
9	chr9:84528281-84528331	BJ	skin:	n/a
10	chr9:84528281-84528331	AoSMC	blood vessel:	n/a
11	chr9:84528281-84528331	AG10803	skin:	n/a
12	chr9:84528281-84528331	GM12878	blood:	n/a
13	chr9:84528281-84528331	Jurkat	blood:	n/a
14	chr9:84528281-84528331	GM19239	blood:	n/a
15	chr9:84528281-84528331	U87	brain:	n/a
16	chr9:84528281-84528331	H1-hESC	embryonic stem cell:	embryo
17	chr9:84528281-84528331	HPAEpiC	pulmonary alveolar:	n/a
18	chr9:84528281-84528331	NH-A	brain:	n/a
19	chr9:84528281-84528331	AG09319	gingival:	n/a
20	chr9:84528281-84528331	RPTEC	kidney:	n/a
21	chr9:84528281-84528331	NHBE	bronchial:	n/a
22	chr9:84528281-84528331	NB4	blood:	n/a
23	chr9:84528281-84528331	HNPCEpiC	eye:	n/a
24	chr9:84528281-84528331	AG04450	lung:	fetal
25	chr9:84528281-84528331	HEK293	kidney:	embryo
26	chr9:84528281-84528331	HL-60	blood:	n/a
27	chr9:84528281-84528331	GM12892	blood:	n/a
28	chr9:84528281-84528331	K562	blood:	n/a
29	chr9:84528281-84528331	AG04449	skin:	fetal
30	chr9:84528281-84528331	HMEC	breast:	n/a
31	chr9:84528281-84528331	HCPEpiC	choroid plexus:	n/a
32	chr9:84528281-84528331	HRPEpiC	eye:	n/a
33	chr9:84528281-84528331	HRCEpiC	kidney:	n/a
34	chr9:84528281-84528331	HRE	kidney:	n/a
35	chr9:84528281-84528331	SKMC	muscle:	n/a
36	chr9:84528281-84528331	PFSK-1	brain:	n/a
37	chr9:84528281-84528331	Hela-S3	cervix:	n/a
38	chr9:84528281-84528331	ProgFib	skin:	n/a
39	chr9:84528281-84528331	Hepatocyte	liver:	n/a
40	chr9:84528281-84528331	IMR90	lung:	fetal
41	chr9:84528281-84528331	BE2_C	brain:	n/a
42	chr9:84528281-84528331	SK-N-SH_RA	brain:	n/a
43	chr9:84528281-84528331	GM12891	blood:	n/a
44	chr9:84528281-84528331	AG09309	skin:	n/a
45	chr9:84528281-84528331	CMK	blood:	n/a
46	chr9:84528281-84528331	ovcar-3	ovarian:	n/a
47	chr9:84528281-84528331	HAEpiC	amniotic membrane:	n/a
48	chr9:84528281-84528331	HIPEpiC	eye:	n/a
49	chr9:84528281-84528331	Caco-2	colon:	n/a
50	chr9:84528281-84528331	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
SPATA31D5P	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv508555	chr9:84507699-84580028	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1820579	chr9:84518394-84556369	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1849322	chr9:84518394-84564267	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1800180	chr9:84519751-84557638	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv17765	chr9:84527569-84566607	Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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