Variant report
| Variant | rs537386763 |
|---|---|
| Chromosome Location | chr20:21735833-21735834 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:15)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:15 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOSL2 | chr20:21735808-21736259 | HepG2 | liver: | n/a | n/a |
| 2 | POLR2A | chr20:21735762-21736505 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 3 | POLR2A | chr20:21735795-21736298 | Hela-S3 | cervix: | n/a | n/a |
| 4 | PAX5 | chr20:21735781-21736306 | GM12878 | blood: | n/a | n/a |
| 5 | ZBTB33 | chr20:21735764-21736371 | K562 | blood: | n/a | n/a |
| 6 | IRF4 | chr20:21735787-21736201 | GM12878 | blood: | n/a | n/a |
| 7 | POLR2A | chr20:21735682-21736435 | GM12892 | blood: | n/a | n/a |
| 8 | POLR2A | chr20:21735798-21736338 | GM12878 | blood: | n/a | n/a |
| 9 | ZBTB33 | chr20:21735825-21736256 | HepG2 | liver: | n/a | n/a |
| 10 | POLR2A | chr20:21735817-21736307 | GM12892 | blood: | n/a | n/a |
| 11 | SP1 | chr20:21735832-21736185 | GM12878 | blood: | n/a | n/a |
| 12 | POLR2A | chr20:21735784-21736332 | GM12892 | blood: | n/a | n/a |
| 13 | POU2F2 | chr20:21735778-21736297 | GM12878 | blood: | n/a | n/a |
| 14 | ZBTB33 | chr20:21735796-21736268 | GM12878 | blood: | n/a | n/a |
| 15 | POLR2A | chr20:21735816-21736261 | GM12891 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPL41P1 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1058137 | chr20:21549350-22295051 | Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv912814 | chr20:21703615-21946928 | Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv962561 | chr20:21723464-21736893 | ZNF genes & repeats | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
