Variant report

Variant	rs537396990
Chromosome Location	chr6:12044861-12044862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12042974..12045827-chr6:12047311..12049973,3	K562	blood:
2	chr6:12012253..12015123-chr6:12042911..12046207,3	MCF-7	breast:
3	chr6:12038244..12040741-chr6:12042062..12045321,3	K562	blood:
4	chr6:12009789..12012137-chr6:12043704..12046977,3	MCF-7	breast:
5	chr6:12025673..12027383-chr6:12043911..12045956,2	K562	blood:
6	chr6:12010545..12015080-chr6:12042990..12048217,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3475103	chr6:12044653-12045155	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	esv3506463	chr6:12044710-12045079	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3475104	chr6:12044721-12045026	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3506461	chr6:12044727-12045191	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
3	chr6:12023200-12047800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:12029200-12045000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:12032000-12047600	Weak transcription	Fetal Stomach	stomach
6	chr6:12034400-12045000	Weak transcription	HUVEC	blood vessel
7	chr6:12034600-12045000	Weak transcription	A549	lung
8	chr6:12034800-12047600	Weak transcription	Fetal Intestine Large	intestine
9	chr6:12034800-12061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:12035000-12049800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:12035200-12047800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:12035200-12052200	Weak transcription	Stomach Mucosa	stomach
13	chr6:12035400-12045000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:12038000-12047600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:12038200-12045000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:12038200-12045000	Weak transcription	Ovary	ovary
17	chr6:12038200-12045000	Weak transcription	Small Intestine	intestine
18	chr6:12038400-12045000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:12040000-12045600	Weak transcription	Primary T cells from cord blood	blood
20	chr6:12040200-12045000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:12040200-12045000	Weak transcription	Gastric	stomach
22	chr6:12040200-12047600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:12040200-12048000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:12040200-12048600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:12040200-12060800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:12040400-12045000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:12040400-12045000	Weak transcription	Left Ventricle	heart
28	chr6:12040400-12045000	Weak transcription	Psoas Muscle	Psoas
29	chr6:12040400-12047400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:12040400-12049400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:12040400-12050200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:12040400-12058800	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:12040400-12059600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:12041000-12060800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:12041400-12048200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:12041400-12052200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:12042200-12045400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:12042200-12050000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:12043200-12045600	Enhancers	K562	blood
40	chr6:12043800-12045600	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr6:12043800-12045800	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr6:12044000-12045800	Enhancers	Liver	Liver
43	chr6:12044200-12047600	Weak transcription	Fetal Intestine Small	intestine
44	chr6:12044400-12045000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:12044400-12046200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:12044600-12045200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:12044600-12045200	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr6:12044600-12045600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:12044600-12045600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr6:12044600-12045600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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