Variant report

Variant	rs537424942
Chromosome Location	chr11:33725747-33725748
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:51)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:51 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:33725348-33725981	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr11:33725258-33726521	U87	brain:	n/a	n/a
3	POLR2A	chr11:33724950-33725761	A549	lung:	n/a	n/a
4	POLR2A	chr11:33725247-33727041	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr11:33725555-33725917	U87	brain:	n/a	n/a
6	POLR2A	chr11:33725269-33726483	K562	blood:	n/a	n/a
7	CTCF	chr11:33725740-33725890	GM12864	blood:	n/a	n/a
8	POLR2A	chr11:33725068-33725837	GM12891	blood:	n/a	n/a
9	POLR2A	chr11:33724918-33725781	HepG2	liver:	n/a	n/a
10	CTCF	chr11:33725640-33725930	A549	lung:	n/a	n/a
11	POLR2A	chr11:33725334-33725747	ECC-1	luminal epithelium:	n/a	n/a
12	POLR2A	chr11:33725361-33727757	HepG2	liver:	n/a	n/a
13	POLR2A	chr11:33724817-33726519	GM12878	blood:	n/a	n/a
14	CTCF	chr11:33725680-33725830	HCM	heart:	n/a	n/a
15	POLR2A	chr11:33724703-33727275	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr11:33724991-33726399	K562	blood:	n/a	n/a
17	POLR2A	chr11:33724634-33727795	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr11:33724921-33725862	GM12891	blood:	n/a	n/a
19	POLR2A	chr11:33722026-33728243	PANC-1	pancreas:	n/a	n/a
20	POLR2A	chr11:33725555-33725874	U87	brain:	n/a	n/a
21	POLR2A	chr11:33725259-33726074	HUVEC	blood vessel:	n/a	n/a
22	POLR2A	chr11:33724925-33725863	GM12891	blood:	n/a	n/a
23	POLR2A	chr11:33724933-33725766	A549	lung:	n/a	n/a
24	POLR2A	chr11:33725331-33726814	MCF10A-Er-Src	breast:	n/a	n/a
25	POLR2A	chr11:33724634-33727281	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr11:33725409-33725799	K562	blood:	n/a	n/a
27	POLR2A	chr11:33724885-33727788	GM12892	blood:	n/a	n/a
28	POLR2A	chr11:33725265-33725789	K562	blood:	n/a	n/a
29	POLR2A	chr11:33724939-33727198	GM12892	blood:	n/a	n/a
30	POLR2A	chr11:33724744-33729888	K562	blood:	n/a	n/a
31	POLR2A	chr11:33725696-33726115	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr11:33725390-33725851	GM12878	blood:	n/a	n/a
33	TCF12	chr11:33725561-33725811	GM12878	blood:	n/a	n/a
34	POLR2A	chr11:33725542-33725752	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr11:33724876-33726501	SK-N-SH	brain:	n/a	n/a
36	POLR2A	chr11:33725477-33727108	K562	blood:	n/a	n/a
37	STAT3	chr11:33725676-33725918	MCF10A-Er-Src	breast:	n/a	n/a
38	POLR2A	chr11:33724939-33726929	GM12892	blood:	n/a	n/a
39	POLR2A	chr11:33724640-33726521	U87	brain:	n/a	n/a
40	POLR2A	chr11:33720387-33727134	HUVEC	blood vessel:	n/a	n/a
41	POLR2A	chr11:33725324-33726537	PFSK-1	brain:	n/a	n/a
42	POLR2A	chr11:33724805-33726238	HUVEC	blood vessel:	n/a	n/a
43	NFATC1	chr11:33725429-33725894	GM12878	blood:	n/a	n/a
44	POLR2A	chr11:33725272-33726358	HCT-116	colon:	n/a	n/a
45	POLR2A	chr11:33725061-33725775	GM12878	blood:	n/a	n/a
46	POLR2A	chr11:33724864-33726933	GM12892	blood:	n/a	n/a
47	POLR2A	chr11:33724796-33726461	MCF-7	breast:	n/a	n/a
48	NFATC1	chr11:33725471-33725945	GM12878	blood:	n/a	n/a
49	POLR2A	chr11:33724737-33729905	A549	lung:	n/a	n/a
50	POLR2A	chr11:33724643-33727840	PANC-1	pancreas:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33714211..33716994-chr11:33723846..33727009,3	MCF-7	breast:
2	chr11:33722652..33724426-chr11:33725685..33727649,2	MCF-7	breast:
3	chr11:33722591..33725977-chr11:33729219..33731745,3	MCF-7	breast:
4	chr11:33724538..33726806-chr11:33736477..33738773,2	MCF-7	breast:
5	chr11:33721709..33724293-chr11:33724908..33726754,2	K562	blood:
6	chr11:33719802..33725980-chr11:33755197..33760109,10	MCF-7	breast:
7	chr11:33720026..33726393-chr11:33756116..33759860,12	MCF-7	breast:
8	chr11:33722219..33726232-chr11:33726761..33732163,6	K562	blood:
9	chr11:33722397..33723935-chr11:33724881..33726688,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C11orf91-1	chr11:33724567-33725791	NONHSAT018710

No data

Variant related genes	Relation type
C11orf91	TF binding region
ENSG00000205177	Chromatin interaction
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv975355	chr11:33725252-33729708	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33718400-33725800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:33722400-33728800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:33722800-33728600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:33722800-33730600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:33723000-33725800	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:33723000-33726000	Enhancers	Fetal Intestine Small	intestine
7	chr11:33723000-33726000	Enhancers	Small Intestine	intestine
8	chr11:33723000-33726400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:33723000-33726400	Enhancers	Fetal Intestine Large	intestine
10	chr11:33723000-33730600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:33723000-33746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:33723200-33726000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:33723200-33726000	Enhancers	HSMM	muscle
14	chr11:33723200-33726400	Enhancers	Colonic Mucosa	Colon
15	chr11:33723200-33726600	Weak transcription	Aorta	Aorta
16	chr11:33723200-33726800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:33723200-33726800	Weak transcription	Ovary	ovary
18	chr11:33723200-33728200	Weak transcription	GM12878-XiMat	blood
19	chr11:33723200-33728400	Enhancers	Brain Angular Gyrus	brain
20	chr11:33723200-33728800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:33723200-33729600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:33723200-33730200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:33723200-33730200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr11:33723200-33730200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:33723200-33730400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:33723200-33730600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:33723200-33730600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:33723200-33730600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:33723200-33731000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:33723200-33731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:33723200-33737400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:33723200-33744400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:33723200-33744400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:33723400-33726000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:33723400-33726400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:33723400-33726800	Weak transcription	Primary T cells from cord blood	blood
37	chr11:33723400-33726800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:33723400-33728200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:33723400-33728600	Enhancers	Brain Hippocampus Middle	brain
40	chr11:33723400-33728800	Enhancers	Brain Substantia Nigra	brain
41	chr11:33723400-33729600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr11:33723400-33730200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:33723400-33730200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:33723400-33731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:33723400-33731200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:33723400-33735000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:33723400-33741400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:33723400-33745000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr11:33723400-33745800	Weak transcription	Primary B cells from peripheral blood	blood
50	chr11:33723400-33746000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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