Variant report

Variant	rs537429048
Chromosome Location	chr6:150396423-150396424
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150396050..150398924-chr6:150713312..150715436,2	MCF-7	breast:
2	chr6:150394796..150396864-chr6:150397633..150400539,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026236	chr6:150360882-150408946	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150390400-150397200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:150390600-150397200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:150390800-150397000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:150390800-150397200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:150390800-150397400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:150390800-150400800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:150391000-150397200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:150391200-150410000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150392400-150400600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:150393800-150397200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:150393800-150397200	Weak transcription	HMEC	breast
12	chr6:150393800-150397400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:150393800-150400800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:150394000-150401800	Weak transcription	Stomach Mucosa	stomach
15	chr6:150395800-150396600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:150395800-150398000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:150396000-150396600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:150396200-150396800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:150396200-150397600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:150396400-150397200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:150396400-150397400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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