Variant report

Variant	rs537490081
Chromosome Location	chr5:93979358-93979359
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:93978811..93981676-chr5:93982231..93984096,2	K562	blood:
2	chr5:93979164..93980988-chr5:93992577..93994431,2	MCF-7	breast:
3	chr5:93977937..93979943-chr5:93986873..93988612,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758002	chr5:93765205-94042201	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759354	chr5:93765205-94042201	Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv462254	chr5:93956937-94056825	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv598953	chr5:93956937-94056825	ZNF genes & repeats Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv882386	chr5:93973177-94008969	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv435825	chr5:93978177-93984514	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93955000-93995400	Weak transcription	Gastric	stomach
2	chr5:93955600-93990800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:93955800-93995400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:93955800-94027600	Weak transcription	NH-A	brain
5	chr5:93956200-93993200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:93957800-93982400	Weak transcription	Psoas Muscle	Psoas
7	chr5:93963800-93995800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:93964600-93995200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:93965800-93988400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:93966600-93980000	Weak transcription	Left Ventricle	heart
11	chr5:93966600-93990800	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:93967200-93979600	Weak transcription	Brain Anterior Caudate	brain
13	chr5:93967400-93991400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:93967600-93979800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:93967600-93988200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:93967800-93991000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:93968000-93990200	Weak transcription	Fetal Kidney	kidney
18	chr5:93968000-93995200	Weak transcription	HSMM	muscle
19	chr5:93969400-94008400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:93971400-93995400	Weak transcription	Spleen	Spleen
21	chr5:93973200-93988400	Weak transcription	Fetal Brain Male	brain
22	chr5:93973400-93989800	Weak transcription	Brain Angular Gyrus	brain
23	chr5:93973800-93995200	Weak transcription	Lung	lung
24	chr5:93973800-94004200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:93974200-93995400	Weak transcription	Ovary	ovary
26	chr5:93974400-93995200	Weak transcription	Thymus	Thymus
27	chr5:93974600-93993400	Strong transcription	Hela-S3	cervix
28	chr5:93975200-93988400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:93975400-93981600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:93975600-93979800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:93975600-93988400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr5:93975600-93990600	Weak transcription	Fetal Heart	heart
33	chr5:93975600-93990800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:93975600-93995200	Weak transcription	Esophagus	oesophagus
35	chr5:93975600-93995200	Weak transcription	Fetal Stomach	stomach
36	chr5:93975600-94012000	Weak transcription	Aorta	Aorta
37	chr5:93975800-93979800	Weak transcription	Adipose Nuclei	Adipose
38	chr5:93975800-93987800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr5:93975800-93988400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:93975800-93989600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr5:93975800-93991000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr5:93975800-93993400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr5:93975800-93994000	Weak transcription	Small Intestine	intestine
44	chr5:93976000-93989400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr5:93976200-93988400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr5:93976600-93979400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:93976600-93980200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr5:93976600-93990200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr5:93976600-93990200	Weak transcription	Liver	Liver
50	chr5:93976600-93990600	Weak transcription	H1 Cell Line	embryonic stem cell

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