Variant report

Variant	rs537530702
Chromosome Location	chr5:15502522-15502523
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv965544	chr5:15502274-15507654	Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15499400-15502600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:15499400-15502600	Active TSS	Colon Smooth Muscle	Colon
3	chr5:15499400-15502600	Active TSS	NHDF-Ad	bronchial
4	chr5:15499400-15502800	Active TSS	Brain Substantia Nigra	brain
5	chr5:15499600-15502600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:15499600-15502600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:15499600-15502600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:15499600-15502600	Active TSS	Aorta	Aorta
9	chr5:15499600-15502600	Active TSS	Fetal Muscle Trunk	muscle
10	chr5:15499600-15502600	Active TSS	Right Ventricle	heart
11	chr5:15499600-15502800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:15499600-15502800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:15499600-15502800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
14	chr5:15499600-15502800	Active TSS	Fetal Kidney	kidney
15	chr5:15499600-15502800	Active TSS	Left Ventricle	heart
16	chr5:15499600-15502800	Active TSS	Ovary	ovary
17	chr5:15499600-15503000	Active TSS	Right Atrium	heart
18	chr5:15499800-15502600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:15499800-15502600	Active TSS	Brain Angular Gyrus	brain
20	chr5:15499800-15502600	Active TSS	Fetal Stomach	stomach
21	chr5:15499800-15503000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:15500000-15502600	Active TSS	Rectal Mucosa Donor 31	rectum
23	chr5:15500000-15502600	Active TSS	HSMMtube	muscle
24	chr5:15500000-15502800	Active TSS	Fetal Muscle Leg	muscle
25	chr5:15500200-15502600	Active TSS	NHLF	lung
26	chr5:15500800-15502800	ZNF genes & repeats	Fetal Heart	heart
27	chr5:15500800-15502800	Flanking Active TSS	Dnd41	blood
28	chr5:15501000-15502800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:15501200-15502600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr5:15501200-15503000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr5:15501400-15502800	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr5:15501600-15502800	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr5:15501600-15502800	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr5:15501600-15512000	Weak transcription	Small Intestine	intestine
35	chr5:15501800-15502600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:15501800-15502800	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr5:15501800-15502800	Flanking Active TSS	Osteobl	bone
38	chr5:15501800-15503000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr5:15501800-15503200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:15501800-15511000	Weak transcription	Lung	lung
41	chr5:15501800-15523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:15502000-15502600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:15502000-15502600	Active TSS	Adipose Nuclei	Adipose
44	chr5:15502000-15502800	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr5:15502000-15505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr5:15502000-15511600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr5:15502000-15515000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr5:15502000-15522200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr5:15502200-15502600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr5:15502200-15502600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links