Variant report

Variant	rs537586841
Chromosome Location	chr11:75091529-75091530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75062379..75064704-chr11:75090478..75092323,2	MCF-7	breast:
2	chr11:75090369..75092612-chr11:75094388..75097255,4	MCF-7	breast:
3	chr11:75090671..75094563-chr11:75095690..75099742,4	K562	blood:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv993873	chr11:75090965-75093952	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75081200-75095200	Weak transcription	Dnd41	blood
2	chr11:75081400-75091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:75083600-75094200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:75083800-75091800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:75083800-75092000	Weak transcription	Adipose Nuclei	Adipose
6	chr11:75083800-75099400	Weak transcription	Right Atrium	heart
7	chr11:75084000-75091600	Weak transcription	K562	blood
8	chr11:75084000-75091800	Weak transcription	Liver	Liver
9	chr11:75085000-75091800	Weak transcription	Hela-S3	cervix
10	chr11:75087000-75091800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:75087400-75091600	Weak transcription	Gastric	stomach
12	chr11:75087400-75099400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:75087800-75091800	Weak transcription	Colonic Mucosa	Colon
14	chr11:75087800-75091800	Weak transcription	Spleen	Spleen
15	chr11:75089800-75092400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:75089800-75092600	Enhancers	Fetal Intestine Large	intestine
17	chr11:75089800-75093000	Enhancers	Fetal Intestine Small	intestine
18	chr11:75090000-75091600	Enhancers	HepG2	liver
19	chr11:75090200-75092200	Enhancers	Fetal Stomach	stomach
20	chr11:75090200-75092400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:75090200-75092800	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr11:75090400-75091800	Weak transcription	Lung	lung
23	chr11:75090400-75096000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr11:75090800-75092200	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:75090800-75092200	Enhancers	Stomach Smooth Muscle	stomach
26	chr11:75090800-75093000	Enhancers	Placenta	Placenta
27	chr11:75091000-75092000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:75091000-75092400	Enhancers	Fetal Heart	heart
29	chr11:75091000-75092400	Enhancers	Fetal Muscle Leg	muscle
30	chr11:75091200-75093000	Enhancers	Stomach Mucosa	stomach
31	chr11:75091400-75092200	Enhancers	HSMM	muscle
32	chr11:75091400-75092400	Enhancers	Placenta Amnion	Placenta Amnion
33	chr11:75091400-75092400	Enhancers	A549	lung
34	chr11:75091400-75094200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr11:75091400-75096000	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links