Variant report

Variant	rs537589679
Chromosome Location	chr6:45491594-45491595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45490175..45491700-chr6:45519334..45521574,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1019561	chr6:45485826-45535222	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv538214	chr6:45485826-45535222	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv3353527	chr6:45491017-45491677	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45465000-45521600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:45466800-45497200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:45479000-45500000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:45481000-45500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:45481400-45500200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:45481400-45514600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:45482000-45500000	Weak transcription	NHDF-Ad	bronchial
8	chr6:45482400-45494600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:45482600-45500200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:45482600-45503600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:45482800-45514800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:45484400-45509400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:45484400-45514600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:45486400-45491800	Weak transcription	Hela-S3	cervix
15	chr6:45488400-45499600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:45488600-45495600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:45488800-45499200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:45488800-45500000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:45489000-45504200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:45489000-45521800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:45489400-45491800	Weak transcription	NH-A	brain
22	chr6:45489600-45492000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:45489600-45492600	Weak transcription	Stomach Mucosa	stomach
24	chr6:45489600-45493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:45489600-45494800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:45489800-45495600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:45489800-45500000	Weak transcription	Fetal Lung	lung
28	chr6:45490000-45493400	Strong transcription	Primary hematopoietic stem cells	blood
29	chr6:45490400-45500000	Weak transcription	HSMMtube	muscle
30	chr6:45490600-45491800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:45490600-45492000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:45490600-45492200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:45490600-45493000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:45490600-45494400	Weak transcription	Dnd41	blood
35	chr6:45490600-45496600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr6:45490800-45491600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:45490800-45492000	Weak transcription	Osteobl	bone
38	chr6:45490800-45492200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:45490800-45492200	Weak transcription	HSMM	muscle
40	chr6:45490800-45495400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:45491000-45496200	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links