Variant report

Variant	rs537589928
Chromosome Location	chr10:99531026-99531027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99526747..99528824-chr10:99529529..99531423,2	MCF-7	breast:
2	chr10:99522811..99525043-chr10:99528774..99531185,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3340017	chr10:99530387-99533135	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3390726	chr10:99530862-99532860	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99526400-99531200	Weak transcription	K562	blood
2	chr10:99529600-99531400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
3	chr10:99530000-99531400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
4	chr10:99530200-99531200	Bivalent Enhancer	Fetal Thymus	thymus
5	chr10:99530200-99532200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
6	chr10:99530400-99531200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr10:99530400-99531400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
8	chr10:99530400-99531400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr10:99530400-99531400	Bivalent Enhancer	Fetal Brain Male	brain
10	chr10:99530400-99531400	Flanking Active TSS	Pancreas	Pancrea
11	chr10:99530400-99532200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
12	chr10:99530600-99531200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr10:99530600-99531200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
14	chr10:99530600-99531200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr10:99530600-99531200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
16	chr10:99530600-99531200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr10:99530600-99531200	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr10:99530600-99531200	Bivalent Enhancer	Fetal Stomach	stomach
19	chr10:99530600-99531400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:99530600-99531400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:99530600-99531400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
22	chr10:99530600-99531400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
23	chr10:99530600-99531400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:99530600-99531400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
25	chr10:99530600-99531600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
26	chr10:99530600-99531600	Bivalent/Poised TSS	HSMM	muscle
27	chr10:99530600-99532000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr10:99530600-99532000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr10:99530600-99532200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
30	chr10:99530600-99532200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr10:99530800-99531200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:99530800-99531200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:99530800-99531200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
34	chr10:99530800-99531200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
35	chr10:99530800-99531200	Bivalent Enhancer	Stomach Mucosa	stomach
36	chr10:99530800-99531400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:99530800-99531400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:99530800-99531400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
39	chr10:99530800-99531400	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:99530800-99531400	Transcr. at gene 5' and 3'	Right Atrium	heart
41	chr10:99530800-99531400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
42	chr10:99530800-99531600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
43	chr10:99530800-99531600	Bivalent/Poised TSS	HSMMtube	muscle
44	chr10:99530800-99532000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
45	chr10:99530800-99532000	Active TSS	Brain Angular Gyrus	brain
46	chr10:99530800-99532000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
47	chr10:99530800-99532000	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr10:99530800-99532000	Bivalent/Poised TSS	Psoas Muscle	Psoas
49	chr10:99530800-99532000	Bivalent Enhancer	Spleen	Spleen
50	chr10:99530800-99532200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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