The 2.0 version of rSNPBase

Variant report

Variant rs537622779
Chromosome Location chr1:172795308-172795309
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172788400-172795400 Weak transcription HUES48 Cell Line embryonic stem cell
2 chr1:172788800-172797000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:172789000-172795400 Weak transcription Duodenum Mucosa Duodenum
4 chr1:172789000-172795400 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr1:172789000-172795400 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:172789000-172796600 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:172789000-172797000 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr1:172789400-172795400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
9 chr1:172790800-172795400 Weak transcription A549 lung
10 chr1:172791200-172795400 Weak transcription Fetal Lung lung
11 chr1:172791200-172806200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:172791400-172795400 Weak transcription Brain Hippocampus Middle brain
13 chr1:172791400-172795400 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:172792000-172795600 Weak transcription K562 blood
15 chr1:172793200-172795600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr1:172793600-172795400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:172793600-172795400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:172793600-172795600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr1:172793800-172795400 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr1:172793800-172795400 Weak transcription Adipose Nuclei Adipose
21 chr1:172793800-172795400 Weak transcription Osteobl bone
22 chr1:172793800-172795600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:172794000-172795400 Weak transcription Muscle Satellite Cultured Cells --
24 chr1:172794200-172795400 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:172794200-172795400 Weak transcription HSMMtube muscle
26 chr1:172794800-172795400 Enhancers NHDF-Ad bronchial
27 chr1:172794800-172795800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr1:172794800-172796000 Enhancers HSMM muscle
29 chr1:172795000-172795400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:172795000-172795400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:172795000-172795400 Enhancers NHLF lung
32 chr1:172795000-172796200 Enhancers Fetal Intestine Small intestine
33 chr1:172795000-172797200 Enhancers Dnd41 blood
34 chr1:172795200-172795400 Enhancers Primary neutrophils fromperipheralblood blood
35 chr1:172795200-172795400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr1:172795200-172795400 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:172795200-172795400 Enhancers Liver Liver
38 chr1:172795200-172795400 Enhancers Brain Angular Gyrus brain
39 chr1:172795200-172795400 Enhancers Rectal Smooth Muscle rectum
40 chr1:172795200-172795400 Enhancers Stomach Mucosa stomach
41 chr1:172795200-172795400 Enhancers Monocytes-CD14+_RO01746 blood
42 chr1:172795200-172795600 Enhancers Primary B cells from cord blood blood
43 chr1:172795200-172795600 Active TSS Brain Anterior Caudate brain
44 chr1:172795200-172796000 Enhancers Primary monocytes fromperipheralblood blood
45 chr1:172795200-172796000 Enhancers Primary B cells from peripheral blood blood
46 chr1:172795200-172796000 Active TSS Stomach Smooth Muscle stomach
47 chr1:172795200-172796200 Enhancers Colon Smooth Muscle Colon
48 chr1:172795200-172796600 Enhancers Primary hematopoietic stem cells blood
49 chr1:172795200-172797400 Enhancers Primary T helper cells fromperipheralblood blood
50 chr1:172795200-172797600 Enhancers Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015