Variant report

Variant	rs537639125
Chromosome Location	chr2:73717809-73717810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428051	chr2:73717032-74030067	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2757806	chr2:73717032-74078592	Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv2759060	chr2:73717032-74078592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv874267	chr2:73717656-73857002	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73676200-73719400	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:73704600-73721000	Weak transcription	HMEC	breast
3	chr2:73704800-73718600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:73705800-73722600	Weak transcription	Brain Substantia Nigra	brain
5	chr2:73706600-73721000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:73707000-73718000	Weak transcription	Fetal Kidney	kidney
7	chr2:73707000-73718000	Weak transcription	A549	lung
8	chr2:73707000-73733400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:73709200-73725400	Weak transcription	Fetal Brain Male	brain
10	chr2:73711800-73740400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:73713000-73721000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:73713000-73721000	Weak transcription	Small Intestine	intestine
13	chr2:73713200-73757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:73713400-73721000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr2:73713800-73719600	Strong transcription	Primary T cells from cord blood	blood
16	chr2:73714000-73719200	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr2:73714600-73718600	Strong transcription	Right Ventricle	heart
18	chr2:73714600-73719200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:73714600-73721200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:73714600-73725200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:73714800-73718800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr2:73714800-73721200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:73714800-73722200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:73715000-73719200	Strong transcription	Ovary	ovary
25	chr2:73715000-73719400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:73715000-73719800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:73715000-73719800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:73715000-73721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr2:73715000-73724600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr2:73715200-73719000	Strong transcription	Dnd41	blood
31	chr2:73715200-73722600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr2:73715400-73718200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:73715400-73719200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:73715400-73719200	Strong transcription	Fetal Brain Female	brain
35	chr2:73715400-73719600	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr2:73715600-73718400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr2:73715600-73718800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr2:73715600-73720800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:73715600-73740200	Weak transcription	Esophagus	oesophagus
40	chr2:73715600-73751800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr2:73715800-73719800	Weak transcription	Colonic Mucosa	Colon
42	chr2:73715800-73720600	Weak transcription	GM12878-XiMat	blood
43	chr2:73715800-73721000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:73715800-73740200	Weak transcription	Gastric	stomach
45	chr2:73716000-73719800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr2:73716200-73718200	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr2:73716200-73718600	Strong transcription	HepG2	liver
48	chr2:73716200-73718800	Strong transcription	Aorta	Aorta
49	chr2:73716400-73718000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr2:73716400-73718600	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links