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Variant report
Variant
rs537642685
Chromosome Location
chr11:46160771-46160772
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:4)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
GATA3
chr11:46160651-46160851
SH-SY5Y
brain:
n/a
n/a
No data
(count:4 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr11:46158575..46160881-chr11:46163043..46165851,3
MCF-7
breast:
2
chr11:46159444..46162124-chr11:46222416..46223935,2
K562
blood:
3
chr11:46156833..46159429-chr11:46159952..46162455,2
K562
blood:
4
chr11:46143681..46146343-chr11:46159365..46161019,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000254871
TF binding region
ENSG00000254871
Chromatin interaction
Extended variants information (count: 1 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv3460785
chr11:46160626-46162733
Inactive region
TF binding regionChromatin interactive region
1 gene(s)
inside rSNPs
n/a
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links