Variant report

Variant	rs537650384
Chromosome Location	chr6:150346547-150346548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150155381..150157771-chr6:150346025..150347800,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv7375	chr6:150324114-150388625	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3344440	chr6:150324131-150388650	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv886766	chr6:150335407-150364009	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv464077	chr6:150338065-150358012	Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv604847	chr6:150338065-150358012	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv5535	chr6:150339697-150361659	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv886768	chr6:150340035-150366143	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv886769	chr6:150346037-150364009	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150345800-150346600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:150345800-150346800	Enhancers	Lung	lung
3	chr6:150345800-150347000	Enhancers	Gastric	stomach
4	chr6:150345800-150347000	Bivalent Enhancer	Stomach Mucosa	stomach
5	chr6:150345800-150347200	Flanking Active TSS	Esophagus	oesophagus
6	chr6:150345800-150347400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:150346000-150346600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
8	chr6:150346000-150346800	Bivalent Enhancer	Fetal Stomach	stomach
9	chr6:150346000-150347000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:150346000-150347400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:150346000-150348200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:150346200-150346600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:150346200-150346600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:150346200-150346600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
15	chr6:150346200-150346800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr6:150346200-150346800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
17	chr6:150346200-150346800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
18	chr6:150346200-150346800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:150346200-150346800	Bivalent Enhancer	Brain Germinal Matrix	brain
20	chr6:150346200-150346800	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr6:150346200-150346800	Enhancers	Ovary	ovary
22	chr6:150346200-150346800	Bivalent Enhancer	Spleen	Spleen
23	chr6:150346200-150347000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr6:150346200-150347000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr6:150346200-150347000	Bivalent Enhancer	Placenta	Placenta
26	chr6:150346200-150347000	Enhancers	Placenta Amnion	Placenta Amnion
27	chr6:150346200-150347200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr6:150346200-150347200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr6:150346200-150347200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
30	chr6:150346200-150347200	Flanking Active TSS	HMEC	breast
31	chr6:150346200-150347400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
32	chr6:150346200-150347400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:150346200-150347400	Bivalent Enhancer	Fetal Heart	heart
34	chr6:150346200-150347400	Enhancers	Pancreas	Pancrea
35	chr6:150346200-150347400	Flanking Active TSS	NHEK	skin
36	chr6:150346200-150347600	Bivalent Enhancer	Fetal Intestine Small	intestine
37	chr6:150346400-150346600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
38	chr6:150346400-150346600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:150346400-150346600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:150346400-150346600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:150346400-150346600	Bivalent Enhancer	Brain Angular Gyrus	brain
42	chr6:150346400-150346600	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:150346400-150346600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
44	chr6:150346400-150346600	Bivalent Enhancer	Colon Smooth Muscle	Colon
45	chr6:150346400-150346600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
46	chr6:150346400-150346600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
47	chr6:150346400-150346600	Bivalent Enhancer	Fetal Brain Male	brain
48	chr6:150346400-150346600	Bivalent/Poised TSS	Fetal Brain Female	brain
49	chr6:150346400-150346600	Bivalent Enhancer	Fetal Lung	lung
50	chr6:150346400-150346600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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