Variant report

Variant	rs537685460
Chromosome Location	chr11:104917135-104917136
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv468863	chr11:104875261-104918517	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	nsv556219	chr11:104875261-104918517	Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv517089	chr11:104915563-104930676	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
13	nsv470	chr11:104916361-104961230	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104912600-104917800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:104912600-104920800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:104914600-104918000	Weak transcription	Gastric	stomach
4	chr11:104914600-104918000	Weak transcription	Spleen	Spleen
5	chr11:104915800-104918600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:104915800-104920400	Enhancers	HepG2	liver
7	chr11:104916000-104917800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:104916000-104918000	Weak transcription	Lung	lung
9	chr11:104916200-104917600	Enhancers	Fetal Stomach	stomach
10	chr11:104916200-104917800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:104916200-104918000	Weak transcription	Brain Substantia Nigra	brain
12	chr11:104916200-104918200	Enhancers	Fetal Intestine Large	intestine
13	chr11:104916200-104920200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:104916400-104917200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:104916400-104917200	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:104916400-104917200	Enhancers	Ovary	ovary
17	chr11:104916400-104917600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:104916400-104917600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:104916400-104917600	Weak transcription	Colonic Mucosa	Colon
20	chr11:104916400-104917600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:104916400-104917600	Weak transcription	HMEC	breast
22	chr11:104916400-104917600	Enhancers	HUVEC	blood vessel
23	chr11:104916400-104917800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:104916400-104917800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:104916400-104917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:104916400-104918200	Enhancers	Fetal Lung	lung
27	chr11:104916400-104918200	Enhancers	Fetal Muscle Leg	muscle
28	chr11:104916400-104918200	Enhancers	Placenta	Placenta
29	chr11:104916400-104918200	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr11:104916400-104918600	Enhancers	Osteobl	bone
31	chr11:104916400-104919800	Enhancers	Hela-S3	cervix
32	chr11:104916600-104917200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:104916600-104917800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:104916600-104917800	Weak transcription	Psoas Muscle	Psoas
35	chr11:104916600-104917800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:104916600-104917800	Weak transcription	Thymus	Thymus
37	chr11:104916600-104918000	Weak transcription	Right Atrium	heart
38	chr11:104916600-104918000	Enhancers	NHLF	lung
39	chr11:104916600-104918200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:104916800-104917200	Weak transcription	Stomach Mucosa	stomach
41	chr11:104916800-104917200	Enhancers	NHEK	skin
42	chr11:104916800-104917400	Enhancers	Dnd41	blood
43	chr11:104916800-104917600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:104916800-104917600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:104916800-104917600	Weak transcription	Fetal Intestine Small	intestine
46	chr11:104916800-104917800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:104916800-104917800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:104916800-104917800	Enhancers	Adipose Nuclei	Adipose
49	chr11:104916800-104918000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:104916800-104918200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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