Variant report

Variant	rs537827111
Chromosome Location	chr15:57028452-57028453
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr15:57028345-57028921	K562	blood:	n/a	n/a
2	POLR2A	chr15:57028330-57028503	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr15:57028426-57028852	MCF10A-Er-Src	breast:	n/a	n/a
4	MYC	chr15:57028445-57028773	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr15:57028387-57028798	MCF10A-Er-Src	breast:	n/a	n/a
6	JUND	chr15:57028441-57028890	HepG2	liver:	n/a	chr15:57028695-57028706
7	JUN	chr15:57028397-57028891	HUVEC	blood vessel:	n/a	n/a
8	FOS	chr15:57028444-57028887	MCF10A-Er-Src	breast:	n/a	n/a
9	JUND	chr15:57028447-57028926	Hela-S3	cervix:	n/a	chr15:57028695-57028706
10	FOS	chr15:57028408-57028871	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ZNF280D	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3387219	chr15:57027535-57031262	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57026000-57028600	Weak transcription	HUVEC	blood vessel
2	chr15:57026000-57029400	Weak transcription	NH-A	brain
3	chr15:57026200-57028600	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:57026200-57029000	Weak transcription	Small Intestine	intestine
5	chr15:57026200-57029200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:57026200-57029200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:57026200-57029200	Weak transcription	Ovary	ovary
8	chr15:57026200-57029600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:57026200-57032400	Weak transcription	Pancreas	Pancrea
10	chr15:57026400-57029000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:57026400-57029200	Enhancers	K562	blood
12	chr15:57026400-57029400	Weak transcription	Fetal Kidney	kidney
13	chr15:57026800-57029000	Weak transcription	Fetal Thymus	thymus
14	chr15:57026800-57030000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:57027000-57028600	Weak transcription	Hela-S3	cervix
16	chr15:57027600-57028800	Enhancers	Placenta	Placenta
17	chr15:57027600-57033000	Enhancers	HepG2	liver
18	chr15:57027800-57030200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:57027800-57032600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr15:57028200-57028800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:57028200-57029000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr15:57028200-57029800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:57028400-57030600	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links