Variant report

Variant	rs537831
Chromosome Location	chr1:94476555-94476556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1801574	0.82[EUR][1000 genomes]
rs2065711	0.82[EUR][1000 genomes]
rs2065712	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs2893264	0.82[EUR][1000 genomes]
rs567370	0.88[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv546849	chr1:94472814-94477232	Bivalent Enhancer Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94458800-94477000	Weak transcription	Right Atrium	heart
2	chr1:94471200-94480600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:94475400-94477400	Weak transcription	Osteobl	bone
4	chr1:94475400-94485600	Weak transcription	NH-A	brain
5	chr1:94475600-94478200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:94476200-94476800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:94476200-94477400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr1:94476200-94477600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:94476400-94479000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:94476400-94479200	Enhancers	Fetal Muscle Trunk	muscle
11	chr1:94476400-94479400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:94476400-94480000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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