Variant report

Variant	rs537845351
Chromosome Location	chr12:117140799-117140800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:117140735..117141671-chr12:117588590..117589561,3	K562	blood:
2	chr12:117140715..117144764-chr12:117146137..117149297,3	MCF-7	breast:
3	chr12:117140723..117141336-chr12:117393093..117394044,4	MCF-7	breast:
4	chr12:117140690..117141624-chr12:117557280..117558280,3	K562	blood:
5	chr12:117140689..117141224-chr12:117393532..117394138,2	K562	blood:
6	chr12:117133986..117137596-chr12:117137852..117142272,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNFT2-2	chr12:117140598-117140935	ENSG00000257654

No data

Variant related genes	Relation type
ENSG00000257654	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3385301	chr12:117140386-117140799	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117132000-117141200	Weak transcription	Lung	lung
2	chr12:117132200-117147000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:117132400-117147000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:117134200-117146600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:117135600-117141400	Weak transcription	Right Atrium	heart
6	chr12:117135600-117147000	Weak transcription	Gastric	stomach
7	chr12:117135800-117146400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr12:117136600-117145600	Weak transcription	Brain Germinal Matrix	brain
9	chr12:117136600-117145600	Weak transcription	Right Ventricle	heart
10	chr12:117136600-117146600	Weak transcription	Ovary	ovary
11	chr12:117136800-117141200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:117136800-117141200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:117136800-117144800	Weak transcription	Fetal Thymus	thymus
14	chr12:117136800-117146400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr12:117136800-117146400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr12:117137000-117141200	Weak transcription	Liver	Liver
17	chr12:117137000-117141200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr12:117137000-117141200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr12:117137800-117146600	Weak transcription	Pancreas	Pancrea
20	chr12:117138200-117141600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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