Variant report

Variant	rs537862392
Chromosome Location	chr4:74747659-74747660
allele	-/GGAAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	esv2574248	chr4:74746585-74748222	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2071430	chr4:74747462-74748007	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3509275	chr4:74747543-74747949	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3509271	chr4:74747545-74747940	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3509273	chr4:74747565-74747854	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3465489	chr4:74747567-74747900	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3465490	chr4:74747590-74747848	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3465491	chr4:74747637-74747817	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3509272	chr4:74747647-74747816	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv2460946	chr4:74747651-74747812	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3465492	chr4:74747651-74747814	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3509276	chr4:74747651-74747814	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv290772	chr4:74747652-74747813	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74736800-74749000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:74741800-74747800	Weak transcription	NHDF-Ad	bronchial
3	chr4:74742000-74748600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:74746800-74748800	Weak transcription	NHEK	skin
5	chr4:74747000-74748800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:74747000-74749000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:74747600-74752200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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