Variant report

Variant	rs537888275
Chromosome Location	chr3:133466460-133466461
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv877507	chr3:133465201-133473516	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133464800-133467000	Active TSS	Brain Anterior Caudate	brain
2	chr3:133464800-133467000	Active TSS	Brain Substantia Nigra	brain
3	chr3:133464800-133467000	Bivalent/Poised TSS	HepG2	liver
4	chr3:133464800-133467200	Active TSS	Brain Hippocampus Middle	brain
5	chr3:133464800-133468200	Active TSS	Brain Cingulate Gyrus	brain
6	chr3:133464800-133468400	Active TSS	Brain Angular Gyrus	brain
7	chr3:133465000-133468200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:133465000-133468400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr3:133465400-133468400	Weak transcription	Esophagus	oesophagus
10	chr3:133465600-133466600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:133465600-133483000	Weak transcription	Brain Germinal Matrix	brain
12	chr3:133465800-133469000	Weak transcription	Pancreas	Pancrea
13	chr3:133465800-133470000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr3:133466000-133467000	Flanking Active TSS	Liver	Liver
15	chr3:133466200-133468200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:133466400-133466800	Enhancers	K562	blood
17	chr3:133466400-133467200	Enhancers	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links