Variant report

Variant	rs537890438
Chromosome Location	chr9:79304052-79304053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79300396..79301994-chr9:79302706..79305324,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893481	chr9:79304043-79348193	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79266400-79306800	Weak transcription	Fetal Stomach	stomach
2	chr9:79290400-79306000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:79296800-79304800	Weak transcription	Fetal Thymus	thymus
4	chr9:79300400-79332200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:79300800-79304200	Enhancers	NHDF-Ad	bronchial
6	chr9:79301600-79305000	Enhancers	Stomach Mucosa	stomach
7	chr9:79302000-79304200	Enhancers	HMEC	breast
8	chr9:79302000-79304200	Enhancers	HSMM	muscle
9	chr9:79302200-79304200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:79302200-79304200	Enhancers	HUVEC	blood vessel
11	chr9:79302400-79304200	Enhancers	HSMMtube	muscle
12	chr9:79302600-79304200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr9:79302600-79304400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:79302600-79305600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr9:79302600-79306600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr9:79302600-79306800	Enhancers	Fetal Intestine Large	intestine
17	chr9:79302600-79306800	Enhancers	Fetal Intestine Small	intestine
18	chr9:79302800-79306600	Weak transcription	Adipose Nuclei	Adipose
19	chr9:79303000-79304200	Enhancers	Brain Angular Gyrus	brain
20	chr9:79303000-79304200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:79303000-79305800	Weak transcription	Brain Germinal Matrix	brain
22	chr9:79303000-79306600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:79303200-79306000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:79303200-79306000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:79303200-79306200	Enhancers	HepG2	liver
26	chr9:79303400-79304200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:79303400-79304200	Enhancers	Brain Substantia Nigra	brain
28	chr9:79303400-79304200	Enhancers	Stomach Smooth Muscle	stomach
29	chr9:79303400-79305200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr9:79303400-79306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:79303600-79304600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:79303600-79304600	Weak transcription	Aorta	Aorta
33	chr9:79303600-79305600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:79303600-79306000	Weak transcription	Brain Hippocampus Middle	brain
35	chr9:79303600-79306000	Weak transcription	Gastric	stomach
36	chr9:79303800-79304200	Enhancers	Osteobl	bone
37	chr9:79303800-79304400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:79303800-79304400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr9:79303800-79304800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr9:79303800-79305000	Weak transcription	Brain Anterior Caudate	brain
41	chr9:79303800-79305200	Weak transcription	Colon Smooth Muscle	Colon
42	chr9:79303800-79305200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr9:79303800-79305400	Weak transcription	Small Intestine	intestine
44	chr9:79303800-79305800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr9:79303800-79306800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:79304000-79304400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr9:79304000-79306400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:79304000-79306800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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