Variant report

Variant	rs537964500
Chromosome Location	chr8:108471753-108471754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1788738	chr8:108471749-108471758	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108467200-108473200	Enhancers	NHDF-Ad	bronchial
2	chr8:108467400-108474600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:108468800-108472800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:108470200-108471800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr8:108470200-108472200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:108470200-108472200	Weak transcription	Fetal Brain Male	brain
7	chr8:108470200-108472200	Weak transcription	Ovary	ovary
8	chr8:108470200-108474400	Weak transcription	Psoas Muscle	Psoas
9	chr8:108470400-108474000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:108470400-108474000	Weak transcription	Aorta	Aorta
11	chr8:108470600-108471800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:108470600-108471800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:108470600-108471800	Weak transcription	Adipose Nuclei	Adipose
14	chr8:108470600-108472000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:108470600-108472200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:108470600-108472200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:108470600-108473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:108470600-108474200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:108470600-108474200	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:108471000-108472000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:108471000-108472200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:108471000-108474400	Weak transcription	Fetal Kidney	kidney
23	chr8:108471000-108474600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:108471200-108471800	Enhancers	K562	blood
25	chr8:108471200-108472400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:108471200-108472800	Enhancers	Stomach Smooth Muscle	stomach
27	chr8:108471400-108471800	Weak transcription	NHLF	lung
28	chr8:108471400-108471800	Weak transcription	Osteobl	bone
29	chr8:108471400-108472200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:108471400-108473800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:108471600-108473400	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links