Variant report

Variant	rs537981467
Chromosome Location	chr11:64074237-64074238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64072922..64075153-chr11:64420349..64423675,3	MCF-7	breast:
2	chr11:64072715..64075742-chr11:64108562..64111155,5	MCF-7	breast:
3	chr11:64068655..64075946-chr11:64105786..64111623,11	K562	blood:
4	chr11:64070986..64076286-chr11:64124810..64128616,7	K562	blood:
5	chr11:64033188..64045448-chr11:64059274..64075790,38	MCF-7	breast:
6	chr11:64073207..64075347-chr11:64577929..64579925,2	MCF-7	breast:
7	chr11:64003628..64022712-chr11:64064086..64078429,56	MCF-7	breast:
8	chr11:63990938..63995618-chr11:64068467..64075569,11	MCF-7	breast:
9	chr11:63932104..63935640-chr11:64072605..64074491,3	MCF-7	breast:
10	chr11:64071995..64074529-chr11:64215478..64217997,2	K562	blood:
11	chr11:64071691..64076218-chr11:64119080..64123328,5	MCF-7	breast:
12	chr11:64073758..64075517-chr11:64122696..64124221,2	K562	blood:
13	chr11:64062581..64067286-chr11:64069885..64074549,10	MCF-7	breast:
14	chr11:64012813..64019826-chr11:64070484..64074683,9	MCF-7	breast:
15	chr11:64001731..64003390-chr11:64072435..64074262,2	MCF-7	breast:
16	chr11:63951617..63953554-chr11:64071921..64074266,2	MCF-7	breast:
17	chr11:64034991..64040375-chr11:64070988..64074526,14	MCF-7	breast:
18	chr11:63752274..63755193-chr11:64072992..64074621,2	MCF-7	breast:
19	chr11:63950774..63958537-chr11:64070493..64074690,13	MCF-7	breast:
20	chr11:64005251..64012775-chr11:64065543..64076594,19	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173511	Chromatin interaction
ENSG00000168071	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000182450	Chromatin interaction
ENSG00000181908	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000149782	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000002330	Chromatin interaction
ENSG00000149743	Chromatin interaction
ENSG00000173457	Chromatin interaction
ENSG00000133315	Chromatin interaction
ENSG00000257086	Chromatin interaction
ENSG00000207024	Chromatin interaction
ENSG00000167770	Chromatin interaction
ENSG00000256940	Chromatin interaction
ENSG00000162302	Chromatin interaction
ENSG00000149761	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000256116	Chromatin interaction
ENSG00000168439	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
6	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
7	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
8	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
11	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
12	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
13	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
14	nsv897667	chr11:63964657-64078380	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
15	nsv897668	chr11:63964657-64085298	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
16	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
17	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
18	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
19	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
20	nsv897672	chr11:63979643-64082807	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
21	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
22	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
23	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
24	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
25	nsv897685	chr11:64048912-64150370	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
26	nsv897687	chr11:64049021-64078380	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
27	esv3343615	chr11:64071901-64074749	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	53 gene(s)	inside rSNPs	n/a
28	esv3414055	chr11:64072226-64074424	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	52 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64071800-64074400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr11:64071800-64074400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:64071800-64074400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:64071800-64074800	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr11:64072000-64074400	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr11:64072000-64074600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr11:64072000-64074600	Active TSS	Fetal Kidney	kidney
8	chr11:64073200-64074800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:64073400-64074400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr11:64073400-64074400	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr11:64073400-64074400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:64073400-64074400	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr11:64073400-64074400	Active TSS	GM12878-XiMat	blood
14	chr11:64073400-64074600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr11:64073400-64074600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:64073400-64074600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:64073400-64074800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:64073400-64074800	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr11:64073600-64074400	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr11:64073600-64074400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr11:64073600-64074400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr11:64073600-64074400	Flanking Active TSS	Fetal Muscle Leg	muscle
23	chr11:64073600-64074400	Flanking Active TSS	NH-A	brain
24	chr11:64073600-64074600	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr11:64073600-64074600	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr11:64073600-64074600	Flanking Active TSS	Placenta	Placenta
27	chr11:64073600-64074600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr11:64073600-64074600	Flanking Active TSS	Spleen	Spleen
29	chr11:64073600-64075000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:64073800-64074400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:64073800-64074400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:64073800-64074400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr11:64073800-64074400	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr11:64073800-64074400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr11:64073800-64074400	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr11:64073800-64074400	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr11:64073800-64074400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr11:64073800-64074400	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr11:64073800-64074400	Flanking Active TSS	Esophagus	oesophagus
40	chr11:64073800-64074400	Flanking Active TSS	Fetal Brain Female	brain
41	chr11:64073800-64074400	Flanking Active TSS	Pancreas	Pancrea
42	chr11:64073800-64074400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
43	chr11:64073800-64074600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:64073800-64074600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:64073800-64074600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:64073800-64074600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr11:64073800-64074600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:64073800-64074600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr11:64073800-64074600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr11:64073800-64074600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links