Variant report

Variant	rs538023838
Chromosome Location	chr15:79102602-79102603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:79102454-79104826	SK-N-SH	brain:	n/a	chr15:79104011-79104024 chr15:79104004-79104025 chr15:79102942-79102951 chr15:79104009-79104027 chr15:79104011-79104024 chr15:79102942-79102955 chr15:79104014-79104027 chr15:79104010-79104026
2	MAX	chr15:79102496-79104404	A549	lung:	n/a	n/a
3	ZBTB7A	chr15:79102553-79104354	ECC-1	luminal epithelium:	n/a	chr15:79104207-79104215 chr15:79104010-79104019
4	POLR2A	chr15:79102406-79104140	H1-neurons	neurons:	n/a	n/a
5	NFIC	chr15:79102445-79103101	ECC-1	luminal epithelium:	n/a	n/a
6	MAX	chr15:79102547-79103763	ECC-1	luminal epithelium:	n/a	n/a
7	POLR2A	chr15:79102471-79103015	HUVEC	blood vessel:	n/a	n/a
8	POLR2A	chr15:79102531-79103285	IMR90	lung:	n/a	n/a
9	MXI1	chr15:79102514-79104214	IMR90	lung:	n/a	n/a
10	E2F6	chr15:79102522-79103344	A549	lung:	n/a	chr15:79102760-79102767 chr15:79102992-79103001
11	RAD21	chr15:79102542-79102918	SK-N-SH_RA	brain:	n/a	n/a
12	REST	chr15:79102183-79104345	H1-neurons	neurons:	n/a	chr15:79103670-79103680 chr15:79103965-79103975 chr15:79102977-79102987 chr15:79103141-79103154
13	NFIC	chr15:79102456-79103233	ECC-1	luminal epithelium:	n/a	n/a
14	SIN3A	chr15:79102418-79103906	H1-hESC	embryonic stem cell:	n/a	chr15:79103433-79103444 chr15:79102945-79102958 chr15:79103670-79103679
15	MAX	chr15:79102557-79103852	ECC-1	luminal epithelium:	n/a	n/a
16	CHD1	chr15:79102556-79103831	IMR90	lung:	n/a	n/a
17	MAZ	chr15:79102260-79104839	IMR90	lung:	n/a	chr15:79102334-79102343

Variant related genes	Relation type
MORF4L1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3354433	chr15:79102422-79105270	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79101400-79104200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:79101800-79103000	Enhancers	Fetal Brain Male	brain
3	chr15:79101800-79103400	Active TSS	Fetal Brain Female	brain
4	chr15:79101800-79104200	Active TSS	Right Atrium	heart
5	chr15:79101800-79104400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:79102000-79102800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
7	chr15:79102000-79102800	Flanking Active TSS	HUVEC	blood vessel
8	chr15:79102000-79103000	Enhancers	Fetal Heart	heart
9	chr15:79102000-79104200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:79102000-79104200	Active TSS	HSMMtube	muscle
11	chr15:79102200-79102800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:79102200-79102800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr15:79102200-79102800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:79102200-79102800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
15	chr15:79102200-79102800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
16	chr15:79102200-79102800	Enhancers	Spleen	Spleen
17	chr15:79102200-79103600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr15:79102200-79104000	Active TSS	NH-A	brain
19	chr15:79102200-79104200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr15:79102200-79104200	Active TSS	Left Ventricle	heart
21	chr15:79102200-79104200	Active TSS	Osteobl	bone
22	chr15:79102400-79102800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr15:79102400-79102800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr15:79102400-79102800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
25	chr15:79102400-79102800	Enhancers	Esophagus	oesophagus
26	chr15:79102400-79102800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
27	chr15:79102400-79102800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
28	chr15:79102400-79102800	Active TSS	Lung	lung
29	chr15:79102400-79102800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
30	chr15:79102400-79102800	Flanking Bivalent TSS/Enh	HepG2	liver
31	chr15:79102400-79102800	Flanking Active TSS	HMEC	breast
32	chr15:79102400-79103000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:79102400-79103000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr15:79102400-79103000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
35	chr15:79102400-79103200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:79102400-79103200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr15:79102400-79103200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:79102400-79103200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:79102400-79103200	Bivalent/Poised TSS	Colonic Mucosa	Colon
40	chr15:79102400-79103400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:79102400-79103400	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr15:79102400-79103600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:79102400-79103600	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr15:79102400-79103600	Bivalent/Poised TSS	A549	lung
45	chr15:79102400-79104000	Active TSS	Muscle Satellite Cultured Cells	--
46	chr15:79102400-79104000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
47	chr15:79102400-79104200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:79102400-79104200	Active TSS	Fetal Kidney	kidney
49	chr15:79102400-79104200	Active TSS	Right Ventricle	heart
50	chr15:79102400-79104200	Active TSS	HSMM	muscle

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