Variant report

Variant	rs538078094
Chromosome Location	chr10:116582211-116582212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116581424..116582241-chr6:24720620..24721196,2	Hela-S3	cervix:
2	chr10:116567584..116574580-chr10:116575101..116583231,11	MCF-7	breast:
3	chr10:116581616..116582495-chr7:115851052..115851797,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000215760	Chromatin interaction
ENSG00000112308	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv518081	chr10:116576189-116582502	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3338822	chr10:116579462-116583960	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3407216	chr10:116580587-116583135	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv3343755	chr10:116580762-116583210	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116579400-116583600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:116579800-116583600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:116580600-116582800	Active TSS	NHEK	skin
4	chr10:116580600-116583000	Active TSS	Placenta Amnion	Placenta Amnion
5	chr10:116580600-116583600	Active TSS	GM12878-XiMat	blood
6	chr10:116580600-116583800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:116580600-116584600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:116580800-116582800	Active TSS	Hela-S3	cervix
9	chr10:116580800-116583000	Active TSS	Brain Angular Gyrus	brain
10	chr10:116580800-116583200	Active TSS	A549	lung
11	chr10:116580800-116583400	Active TSS	NH-A	brain
12	chr10:116580800-116584200	Active TSS	NHLF	lung
13	chr10:116580800-116584600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:116581000-116582400	Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr10:116581000-116582400	Active TSS	Rectal Mucosa Donor 31	rectum
16	chr10:116581000-116582400	Active TSS	HepG2	liver
17	chr10:116581000-116582600	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr10:116581000-116582600	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr10:116581000-116582600	Active TSS	Primary T cells from cord blood	blood
20	chr10:116581000-116582600	Active TSS	Brain Anterior Caudate	brain
21	chr10:116581000-116582800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:116581000-116582800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:116581000-116582800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:116581000-116582800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr10:116581000-116582800	Active TSS	Fetal Brain Female	brain
26	chr10:116581000-116582800	Active TSS	Fetal Kidney	kidney
27	chr10:116581000-116583000	Active TSS	H1 Cell Line	embryonic stem cell
28	chr10:116581000-116583000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:116581000-116583000	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr10:116581000-116583000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:116581000-116583000	Active TSS	Brain Cingulate Gyrus	brain
32	chr10:116581000-116583000	Active TSS	Brain Hippocampus Middle	brain
33	chr10:116581000-116583000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:116581000-116583000	Active TSS	Brain Substantia Nigra	brain
35	chr10:116581000-116583000	Active TSS	Colon Smooth Muscle	Colon
36	chr10:116581000-116583000	Active TSS	Placenta	Placenta
37	chr10:116581000-116583000	Active TSS	Rectal Smooth Muscle	rectum
38	chr10:116581000-116583000	Active TSS	K562	blood
39	chr10:116581000-116583200	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr10:116581000-116583200	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr10:116581000-116583200	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr10:116581000-116583200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:116581000-116583200	Active TSS	Duodenum Mucosa	Duodenum
44	chr10:116581000-116583200	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr10:116581000-116583200	Active TSS	Fetal Intestine Large	intestine
46	chr10:116581000-116583200	Active TSS	Fetal Intestine Small	intestine
47	chr10:116581000-116583200	Active TSS	Fetal Lung	lung
48	chr10:116581000-116583200	Active TSS	Fetal Muscle Leg	muscle
49	chr10:116581000-116583200	Active TSS	Fetal Stomach	stomach
50	chr10:116581000-116583200	Active TSS	Ovary	ovary

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