Variant report

Variant	rs538083955
Chromosome Location	chr7:66188818-66188819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66188092..66189654-chr7:66204070..66206551,2	MCF-7	breast:
2	chr7:66183509..66185499-chr7:66186909..66189328,2	K562	blood:

Variant related genes	Relation type
ENSG00000272831	Chromatin interaction
ENSG00000243335	Chromatin interaction
ENSG00000154710	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	esv3385090	chr7:66146376-66205022	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3401338	chr7:66147493-66206298	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv888328	chr7:66173040-66327654	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	esv3333196	chr7:66188566-66188925	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66149000-66199600	Weak transcription	Thymus	Thymus
2	chr7:66149600-66190200	Weak transcription	Hela-S3	cervix
3	chr7:66159600-66190600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:66162400-66189400	Weak transcription	Psoas Muscle	Psoas
5	chr7:66162600-66192400	Weak transcription	NH-A	brain
6	chr7:66162600-66196800	Weak transcription	Right Ventricle	heart
7	chr7:66163000-66190800	Weak transcription	Esophagus	oesophagus
8	chr7:66165200-66189800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:66165400-66204600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:66165800-66197000	Weak transcription	Right Atrium	heart
11	chr7:66173000-66190400	Weak transcription	Fetal Heart	heart
12	chr7:66173200-66190600	Weak transcription	Brain Substantia Nigra	brain
13	chr7:66174200-66190400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:66175000-66190800	Weak transcription	Pancreas	Pancrea
15	chr7:66175000-66190800	Weak transcription	Spleen	Spleen
16	chr7:66176400-66204600	Weak transcription	Colonic Mucosa	Colon
17	chr7:66177200-66191200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:66177600-66193600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:66178600-66200400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:66178800-66190200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:66178800-66193600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:66178800-66197000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:66179000-66189200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:66179000-66190000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:66179000-66190600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:66179000-66197200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:66179200-66189800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr7:66179200-66190400	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:66179200-66200600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:66179400-66199800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr7:66179600-66204600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr7:66180200-66190200	Weak transcription	NHLF	lung
33	chr7:66180600-66189600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:66180800-66189800	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:66180800-66193600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:66181000-66189600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr7:66181200-66189600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr7:66181200-66189600	Weak transcription	NHEK	skin
39	chr7:66181600-66189400	Weak transcription	Brain Germinal Matrix	brain
40	chr7:66181600-66193600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr7:66181600-66196000	Weak transcription	Ovary	ovary
42	chr7:66181600-66202000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:66181800-66189600	Weak transcription	HepG2	liver
44	chr7:66182200-66190600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:66182600-66199800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:66182800-66190200	Weak transcription	Left Ventricle	heart
47	chr7:66182800-66205000	Weak transcription	Gastric	stomach
48	chr7:66184000-66192200	Weak transcription	Fetal Brain Female	brain
49	chr7:66184200-66190400	Weak transcription	Primary T cells from cord blood	blood
50	chr7:66184200-66190400	Weak transcription	Brain Anterior Caudate	brain

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