Variant report

Variant	rs538086593
Chromosome Location	chr9:101310824-101310825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101304068..101307864-chr9:101310405..101312317,3	MCF-7	breast:
2	chr9:101305246..101310158-chr9:101310437..101314302,6	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:101 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3481710	chr9:101307131-101313629	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1804950	chr9:101307334-101311079	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3497312	chr9:101307881-101312729	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1849640	chr9:101308111-101311079	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv511424	chr9:101308111-101313371	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3481704	chr9:101308156-101313004	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3497318	chr9:101308263-101312125	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3497323	chr9:101308331-101312679	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv6633	chr9:101308371-101342811	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv3481709	chr9:101308625-101312022	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv996617	chr9:101308786-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3481706	chr9:101308831-101312179	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv6610	chr9:101308861-101311892	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3481711	chr9:101308912-101311769	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3497316	chr9:101308918-101312537	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3497315	chr9:101308941-101311771	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3497314	chr9:101308952-101311758	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3497320	chr9:101308960-101311710	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3497321	chr9:101308962-101311701	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3481705	chr9:101308962-101311757	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3481708	chr9:101308968-101311735	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv4244	chr9:101308969-101311805	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv821298	chr9:101308973-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv825001	chr9:101308973-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv3481703	chr9:101308982-101311692	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv3497322	chr9:101308986-101311715	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv515117	chr9:101308987-101311051	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv3497317	chr9:101308990-101311710	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
32	nsv825002	chr9:101308995-101311193	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv825003	chr9:101308995-101311617	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv825004	chr9:101308995-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	esv3353667	chr9:101309006-101311685	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	esv3497311	chr9:101309010-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv825005	chr9:101309017-101311617	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	nsv825006	chr9:101309017-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv3481712	chr9:101309029-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
40	esv20045	chr9:101309035-101311127	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv3497313	chr9:101309043-101311665	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
42	nsv499735	chr9:101309043-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
43	esv3481713	chr9:101309044-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
44	esv3497324	chr9:101309044-101311670	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	nsv614943	chr9:101309058-101310833	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
46	nsv614944	chr9:101309058-101310955	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
47	esv1792635	chr9:101309058-101311079	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
48	esv1797886	chr9:101309058-101311079	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
49	esv1802162	chr9:101309058-101311079	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
50	esv1802312	chr9:101309058-101311079	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101304400-101311800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:101308200-101311800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links