Variant report

Variant	rs538088163
Chromosome Location	chr11:15931672-15931673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv818799	chr11:15930472-15946803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15919800-15934400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:15923600-15933200	Weak transcription	Right Atrium	heart
3	chr11:15923800-15933200	Weak transcription	Right Ventricle	heart
4	chr11:15924000-15932000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:15928000-15933200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:15928400-15931800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:15928400-15932000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:15928400-15933200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:15928600-15941800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:15929000-15933000	Weak transcription	Spleen	Spleen
11	chr11:15929200-15932200	Weak transcription	Pancreas	Pancrea
12	chr11:15929400-15932000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:15930600-15932000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:15931400-15934200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr11:15931600-15932000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:15931600-15935800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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