Variant report

Variant	rs538098155
Chromosome Location	chr20:1164987-1164988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531450	chr20:809607-1221836	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1058524	chr20:821434-1254865	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv544138	chr20:821434-1254865	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1057939	chr20:824980-1316778	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv912585	chr20:992713-1210647	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1057097	chr20:1030940-1314265	Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3437185	chr20:1164977-1167825	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1152800-1165000	Weak transcription	Brain Substantia Nigra	brain
2	chr20:1153800-1165400	Weak transcription	A549	lung
3	chr20:1156400-1165000	Weak transcription	Brain Angular Gyrus	brain
4	chr20:1156600-1165000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:1157200-1165200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:1157800-1165000	Weak transcription	Brain Anterior Caudate	brain
7	chr20:1157800-1165000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr20:1158000-1165200	Weak transcription	Pancreas	Pancrea
9	chr20:1158400-1165200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr20:1159000-1165000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr20:1159000-1165000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr20:1159800-1165000	Weak transcription	Liver	Liver
13	chr20:1162000-1165200	Weak transcription	Gastric	stomach
14	chr20:1162000-1165200	Weak transcription	Left Ventricle	heart
15	chr20:1163400-1165000	Bivalent Enhancer	Fetal Lung	lung
16	chr20:1163800-1165200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
17	chr20:1164400-1165000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr20:1164400-1165200	Enhancers	Right Ventricle	heart
19	chr20:1164600-1165200	Bivalent Enhancer	Brain Hippocampus Middle	brain
20	chr20:1164600-1165200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
21	chr20:1164600-1165600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr20:1164800-1165000	Bivalent Enhancer	Fetal Brain Male	brain
23	chr20:1164800-1165200	Bivalent Enhancer	Spleen	Spleen
24	chr20:1164800-1165200	Flanking Active TSS	K562	blood
25	chr20:1164800-1165400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
26	chr20:1164800-1165600	Flanking Bivalent TSS/Enh	HepG2	liver
27	chr20:1164800-1166800	Active TSS	Pancreatic Islets	Pancreatic Islet

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