Variant report

Variant	rs538099729
Chromosome Location	chr15:57630100-57630101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57627655..57630463-chr15:57790410..57793260,2	K562	blood:
2	chr15:57614320..57618855-chr15:57629284..57632959,4	K562	blood:

Variant related genes	Relation type
ENSG00000260870	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv569579	chr15:57622600-57775806	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1045656	chr15:57622685-57748473	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv542395	chr15:57622685-57748473	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2751536	chr15:57627408-57788408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv457165	chr15:57629099-57767982	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv569580	chr15:57629099-57767982	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57613000-57635400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:57618600-57632000	Weak transcription	Spleen	Spleen
3	chr15:57625200-57632000	Enhancers	HUVEC	blood vessel
4	chr15:57626600-57632600	Enhancers	Fetal Muscle Trunk	muscle
5	chr15:57626600-57633400	Enhancers	Fetal Muscle Leg	muscle
6	chr15:57627000-57631000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:57627000-57633000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:57627200-57635400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:57627200-57635400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:57627400-57630200	Weak transcription	HSMMtube	muscle
11	chr15:57627400-57635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:57627600-57668200	Weak transcription	Right Atrium	heart
13	chr15:57628200-57632000	Weak transcription	Fetal Kidney	kidney
14	chr15:57628200-57632600	Weak transcription	Fetal Heart	heart
15	chr15:57629200-57631200	Enhancers	Adipose Nuclei	Adipose
16	chr15:57629400-57630400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr15:57629400-57630600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:57629400-57630600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:57629400-57631600	Enhancers	Fetal Stomach	stomach
20	chr15:57629600-57630200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr15:57629600-57630200	Weak transcription	Lung	lung
22	chr15:57629600-57630600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:57629600-57638000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:57629800-57630200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:57629800-57630200	Enhancers	Stomach Smooth Muscle	stomach
26	chr15:57629800-57630200	Enhancers	K562	blood
27	chr15:57629800-57630600	Enhancers	Primary hematopoietic stem cells	blood
28	chr15:57629800-57630600	Enhancers	HSMM	muscle
29	chr15:57629800-57631200	Enhancers	Stomach Mucosa	stomach
30	chr15:57630000-57630200	Enhancers	Fetal Intestine Large	intestine
31	chr15:57630000-57630200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr15:57630000-57630200	Flanking Bivalent TSS/Enh	HepG2	liver
33	chr15:57630000-57630400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:57630000-57630600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:57630000-57630600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:57630000-57630600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr15:57630000-57630600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:57630000-57630600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:57630000-57630600	Enhancers	Duodenum Mucosa	Duodenum
40	chr15:57630000-57630600	Enhancers	NH-A	brain
41	chr15:57630000-57630600	Enhancers	NHLF	lung
42	chr15:57630000-57631200	Enhancers	Fetal Intestine Small	intestine

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