Variant report

Variant rs538112661
Chromosome Location chr21:47572681-47572682
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:47562600-47580600 Weak transcription iPS-15b Cell Line embryonic stem cell
2 chr21:47564000-47572800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr21:47564000-47573000 Weak transcription Brain Anterior Caudate brain
4 chr21:47564000-47573000 Weak transcription Stomach Mucosa stomach
5 chr21:47564200-47572800 Weak transcription Right Atrium heart
6 chr21:47564200-47573000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr21:47564200-47573000 Weak transcription Fetal Lung lung
8 chr21:47564800-47575200 Weak transcription H9 Cell Line embryonic stem cell
9 chr21:47567400-47573000 Weak transcription Duodenum Mucosa Duodenum
10 chr21:47567400-47573600 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr21:47569400-47572800 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
12 chr21:47569800-47572800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr21:47570200-47572800 Genic enhancers Liver Liver
14 chr21:47570400-47573200 Weak transcription Brain Substantia Nigra brain
15 chr21:47570600-47572800 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr21:47570800-47573000 Weak transcription Brain Inferior Temporal Lobe brain
17 chr21:47570800-47573000 Enhancers Fetal Muscle Trunk muscle
18 chr21:47571000-47573000 Weak transcription Brain Cingulate Gyrus brain
19 chr21:47571000-47574600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
20 chr21:47571200-47572800 Weak transcription iPS-18 Cell Line embryonic stem cell
21 chr21:47571200-47574200 Enhancers H1 Cell Line embryonic stem cell
22 chr21:47571400-47573000 Weak transcription HUES64 Cell Line embryonic stem cell
23 chr21:47571600-47572800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr21:47571800-47572800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr21:47572000-47572800 Enhancers Ovary ovary
26 chr21:47572000-47572800 Genic enhancers HepG2 liver
27 chr21:47572000-47573800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
28 chr21:47572200-47572800 Enhancers Fetal Intestine Small intestine
29 chr21:47572200-47572800 Enhancers K562 blood
30 chr21:47572200-47573000 Bivalent Enhancer Fetal Stomach stomach
31 chr21:47572200-47573000 Enhancers Rectal Mucosa Donor 31 rectum
32 chr21:47572200-47573800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr21:47572200-47573800 Enhancers HSMMtube muscle
34 chr21:47572200-47574000 Enhancers Fetal Muscle Leg muscle
35 chr21:47572200-47574200 Enhancers Fetal Heart heart
36 chr21:47572400-47573400 Bivalent Enhancer Skeletal Muscle Female skeletal muscle
37 chr21:47572600-47572800 Bivalent Enhancer Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr21:47572600-47572800 Enhancers Fetal Intestine Large intestine
39 chr21:47572600-47573000 Enhancers Breast Myoepithelial Primary Cells Breast
40 chr21:47572600-47573000 Enhancers Muscle Satellite Cultured Cells --
41 chr21:47572600-47573000 Bivalent Enhancer Skeletal Muscle Male skeletal muscle
42 chr21:47572600-47573000 Bivalent Enhancer NHEK skin
43 chr21:47572600-47573400 Enhancers Pancreas Pancrea
44 chr21:47572600-47573600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr21:47572600-47573600 Enhancers Spleen Spleen
46 chr21:47572600-47573800 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
47 chr21:47572600-47574000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr21:47572600-47574000 Enhancers Placenta Placenta

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